DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and SEMA5B

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001243276.1 Gene:SEMA5B / 54437 HGNCID:10737 Length:1205 Species:Homo sapiens


Alignment Length:608 Identity:207/608 - (34%)
Similarity:312/608 - (51%) Gaps:88/608 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SRPSSAAMLVNAIPMILLITLSGLTIVAGWM---PDVKPDLQTKQD------------KVLAHFI 54
            :|.:...::|.|.|:.:.:.|..||::...:   .||..:..::|.            :.|..::
Human   105 ARTAEGPIMVLAGPLAVSLLLPSLTLLVSHLSSSQDVSSEPSSEQQLCALSKHPTVAFEDLQPWV 169

  Fly    55 GNST-----DYFKI-LDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGKHEW 113
            .|.|     |:.:: ||.:...::|||::.::.:||..:..:...||.|::..|..|..|||.|.
Human   170 SNFTYPGARDFSQLALDPSGNQLIVGARNYLFRLSLANVSLLQATEWASSEDTRRSCQSKGKTEE 234

  Fly   114 DCHNYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVE-AQGL 177
            :|.||:||..: ...:|.:||||::.|.|        :|.:.|:          :||.:| ..|:
Human   235 ECQNYVRVLIV-AGRKVFMCGTNAFSPMC--------TSRQVGN----------LSRTIEKINGV 280

  Fly   178 --CPYSPAHNSTYAF-ADGHLYSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAI 234
              |||.|.||||... :.|.||:|||.||||.||.|||.     .|||.||:.|.||:|:||.|.
Human   281 ARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAY 345

  Fly   235 ERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFY 299
            :...:..||.||.::| .:.|:.||||||||||||.||.:....:||:|:|||||||.|||.|||
Human   346 DIGLFAYFFLRENAVE-HDCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFY 409

  Fly   300 FDEIQAISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVE 364
            ::|:|:...:.|   :.|||.||||:||:|..|||||||:..|..||:|.|:.|::.::.|||: 
Human   410 YNELQSAFHLPE---QDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAAWLPI- 470

  Fly   365 REQVPKPRPGQCVE--DSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTK--VNLHHRLTAIAVH 425
            ...:|..:.|...|  .:..||..::...:...||.|||..|...|.:|:  |...|.:..:.  
Human   471 ANPIPNFQCGTLPETGPNENLTERSLQDAQRLFLMSEAVQPVTPEPCVTQDSVRFSHLVVDLV-- 533

  Fly   426 PQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDR-LKTVVISEMQVLPLG--TPIRELV 487
             |.|.   ..|.|:|.||:.|.:.|.:        ||..| |....:.|:.|||.|  .|:|.|.
Human   534 -QAKD---TLYHVLYIGTESGTILKAL--------STASRSLHGCYLEELHVLPPGRREPLRSLR 586

  Fly   488 ISTSKNSLVVVSDGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTY 552
            |..|..:|.|.....::.|||..|:.......||..:||.|.||.:...|..|..|.:   ...:
Human   587 ILHSARALFVGLRDGVLRVPLERCAAYRSQGACLGARDPYCGWDGKQQRCSTLEDSSN---MSLW 648

  Fly   553 LQSLNSTKKAAALLCP--HIPRD 573
            .|::.:        ||  ::.||
Human   649 TQNITA--------CPVRNVTRD 663

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 180/477 (38%)
PSI 510..>537 CDD:214655 8/26 (31%)
SEMA5BNP_001243276.1 Sema_5B 172..608 CDD:200525 178/473 (38%)
PSI 609..656 CDD:279745 12/57 (21%)
TSP1 667..718 CDD:214559
TSP1 721..774 CDD:214559
TSP1 779..825 CDD:214559
TSP1 910..962 CDD:214559
TSP1 967..1019 CDD:214559
TSP_1 1023..1064 CDD:278517
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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