DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema6d

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_998164.3 Gene:sema6d / 406272 ZFINID:ZDB-GENE-040426-1933 Length:898 Species:Danio rerio


Alignment Length:813 Identity:258/813 - (31%)
Similarity:371/813 - (45%) Gaps:181/813 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 MILLITLSGLTIVAGWMP-DVKP-DLQTKQDKVL-AHFIG----NST-----DYFKILDHNDEFV 71
            |:||..|..|...|...| |::| .:....|..| ..|.|    |.|     ||.::: .....:
Zfish    21 MVLLAWLLPLITSATPFPRDLQPISVVGLDDSYLYPSFQGLVSSNETERLGLDYQRMM-RIQHML 84

  Fly    72 LVGAKDVIYNVSL-NGLKEIAR---LEWHSTDADRELCALKGKHEWDCHNYLRVYALRPNGEVLL 132
            .:.|:|.::.|:| ..:.||..   |.|.|||..:  |.::|::..:|:||::|...|.:..:..
Zfish    85 YIAARDHVFVVNLTTAVDEIIPQQILTWRSTDVSK--CTVRGRNSDECYNYIKVLVPRNDETLFA 147

  Fly   133 CGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYS 197
            ||||:..|.||:|   .:||.|            :|.:::..|..||:....::...||.||.||
Zfish   148 CGTNALNPACRNY---RLSSLE------------QVGQELLGQARCPFESRQSNVGVFAGGHFYS 197

  Fly   198 ATVADFSGGDPLIYRE-------NLRTEQYDLKQLNQPDFVGAIERNGYVLFFFRELSMEVMNFG 255
            |||.||...|.:|||.       .|||.:||.|.|.:|.|:.|:|...||.|||.|:::|....|
Zfish   198 ATVTDFQASDAVIYRSLGGEGRPVLRTVKYDSKWLREPHFLHAVEYGNYVYFFFSEIAVEHTAAG 262

  Fly   256 KAVYSRVARVCKNDRGGPYS-HGKSWTSFLKARLNCSVPGEFPFYFDEIQAISPIVESGSKSLIY 319
            |.||||||||||||.||... ..:.|||||||||||||||:..||||.:|:::.:::...:..:.
Zfish   263 KVVYSRVARVCKNDNGGSTRVLDRHWTSFLKARLNCSVPGDTFFYFDVLQSLTNVLQINQRPAVV 327

  Fly   320 AVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPGQCV-EDSRTL 383
            .||||..|:|||||||.|.:|||...|:|.||.||:|.|.|..|..|||||||||.|. |.|.:.
Zfish   328 GVFTTQTNSIPGSAVCGFYLDDIERVFNGRFKEQKNSDSMWTAVPEEQVPKPRPGSCAGEGSASS 392

  Fly   384 TSIAV-------NFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYD--VI 439
            .|.:|       :|||.||||||:||:|:.:||:|.....::||.|.    |.:.:|.:.:  |:
Zfish   393 YSSSVQFPDSVLSFIKTHPLMEESVPSVNSQPLITNTASSYKLTQIV----VDTAAGPHKNRTVV 453

  Fly   440 YSGTDDGKVTKFINILSTHPNST--------VDRLK-TVVISEMQVLPLGTPIRELVISTSKNSL 495
            :.|::||:|.|.:.  :||.||:        :|... |..:.|..||       .|.:....::|
Zfish   454 FLGSEDGRVLKILT--NTHTNSSHTSQLLEDIDVFNPTRCVGERAVL-------GLELDKEHHAL 509

  Fly   496 VVVSDGSLVSVPLHHCSHIVDC-LGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYLQSLNST 559
            .|.....::.|||..|:....| ..||...||.|.| |:|..|.::|.     |.|...:     
Zfish   510 FVAFSSCVIRVPLSRCAQHATCRRRCLYTHDPYCIW-LRTGRCADMAP-----GFKAGFE----- 563

  Fly   560 KKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQGNQPSLEQQPTGGDDFGLNK 624
                        :|..|.:|..|.|.    |:......|:|.|:..:...::|.|          
Zfish   564 ------------QDIDGEQTHLFDTC----TDVMSSAGSDVKSAVDSASGVKQLP---------- 602

  Fly   625 ITLTSMDPDDIMPNLNDPQKSTASVDEIKYASTPSFMLLTTIVFFTFLVGGIAGICCVKAKSRLM 689
                  |.|.:....:                   |.||...|...|::|.||....|....|..
Zfish   603 ------DADSLSDGYH-------------------FTLLGACVLLAFVLGAIASGLLVSCYCRQS 642

  Fly   690 -------EAQMDESHRNHFGKPMQFKHQNTGKDINLLM-----------GSNAYT---------- 726
                   ||.:..:|.:........|       |||||           .::.|:          
Zfish   643 SPSTPEPEATLAHTHAHTLSLSSLAK-------INLLMDNKPEKKSESPSAHIYSPAKPPEELPP 700

  Fly   727 TTQKTPNLDLEK--------DRSHECKNSTEHL 751
            |...||.|.::.        :||| ..|||..|
Zfish   701 TPDSTPELPIKNIKAISSQWERSH-THNSTLQL 732

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 188/495 (38%)
PSI 510..>537 CDD:214655 10/27 (37%)
sema6dNP_998164.3 Sema 64..523 CDD:301699 186/489 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 318 1.000 Domainoid score I1228
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 349 1.000 Inparanoid score I2257
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6502
orthoMCL 1 0.900 - - OOG6_101616
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X415
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
98.820

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