DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and Sema3b

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001073411.1 Gene:Sema3b / 363142 RGDID:1310079 Length:749 Species:Rattus norvegicus


Alignment Length:561 Identity:176/561 - (31%)
Similarity:280/561 - (49%) Gaps:61/561 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RPSSAAMLVNAIPMILLITLSGLTIVAGWMPDVKPDLQTKQDK--VLAHFIGNSTDYFKIL-DHN 67
            |..:|||    ||.:.|:.::||...|..:|.::...|..|.:  :....:..:..|..:| |..
  Rat     3 RAEAAAM----IPGLALLWVAGLGDAAPNLPRLRLSFQELQAQHGIRTFRLERTCCYEALLVDEE 63

  Fly    68 DEFVLVGAKDVIYNVSLNGL-KEIARLEWHSTDADRELCALKGKH-EWDCHNYLRVYALRPNGEV 130
            ...:.|||::.:.::||:.: |...:|.|.:....||.|...||. ..:|.|::::.....:..:
  Rat    64 RGRLFVGAENHVASLSLDNISKRAKKLAWPAPVEWREECNWAGKDIGTECMNFVKLLHAYNHTHL 128

  Fly   131 LLCGTNSYKPRCRHYTPVEVSSEEAGSAGH---AHAMRYEVSRDVEAQGLCPYSPAHNSTYAFAD 192
            |.|||.::.|.|..   |||        ||   ...:|.::.:..:.:|..||.|.|.:......
  Rat   129 LACGTGAFHPTCAF---VEV--------GHRLEEPMLRLDLRKLEDGKGKSPYDPRHRAASVLVG 182

  Fly   193 GHLYSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAI-------ERNGYVLFFFR 245
            ..|||...||..|.|..|:|.     :||||.:|.:.||:|.||...       ..:..:.||||
  Rat   183 EELYSGVAADLMGRDFTIFRSLGQNPSLRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFR 247

  Fly   246 ELSMEVM-NFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPG-EFPFYFDEIQAISP 308
            |.::|.. ..|:...|||.::|:||.||..|....||:||||||.||||| |...:||::|.:. 
  Rat   248 ESAVEAAPAMGRMTVSRVGQICRNDLGGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQDVF- 311

  Fly   309 IVESGSKS--LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKP 371
            ::.|..:.  .:||||:||.....|||||.::::|:..||.|.|..::.....|:..: .:||.|
  Rat   312 LLSSRDRQTPFLYAVFSTSSGIFQGSAVCVYSMNDVRRAFLGPFAHKEGPTHQWVSYQ-GRVPYP 375

  Fly   372 RPGQCVEDSRTLTSIA---------VNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQ 427
            |||.|  .|:|..:.:         :.|.:|||||..:|..:.||||..:|...:..|.||. .:
  Rat   376 RPGMC--PSKTFGTFSSTKDFPDDVIQFARNHPLMYNSVLPMGGRPLFLQVGAGYTFTQIAA-DR 437

  Fly   428 VKSLSGAYYDVIYSGTDDGKVTKFINI-LSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTS 491
            |.:..| :|||::.|||.|.|.|.|:: ..:.|||     :.:::.|:||......|..:.||:.
  Rat   438 VAAADG-HYDVLFIGTDVGTVLKVISVPKGSRPNS-----EGLLLEELQVFEDSAAITSMQISSK 496

  Fly   492 KNSLVVVSDGSLVSVPLHHCSHI-VDCLGCLSLQDPICAWD 531
            ::.|.:.|..::..:.||.|..: ..|..|...:||.||||
  Rat   497 RHQLYIASPSAVAQIALHRCPALGRACAECCLARDPYCAWD 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 154/487 (32%)
PSI 510..>537 CDD:214655 9/23 (39%)
Sema3bNP_001073411.1 Sema 46..516 CDD:301699 154/491 (31%)
PSI 515..>551 CDD:214655 9/23 (39%)
Ig 575..665 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.910

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