DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema3ab

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_571136.1 Gene:sema3ab / 30267 ZFINID:ZDB-GENE-991209-6 Length:778 Species:Danio rerio


Alignment Length:710 Identity:206/710 - (29%)
Similarity:324/710 - (45%) Gaps:116/710 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 MPDVKP---DLQTKQDKVLAHFIGNSTDYFK-ILDHNDEFVLVGAKDVIYNVSLNGLKEIARL-E 94
            :|.:||   ::....:.:..:.:.||:.|.. :||.....:.|||||.:.:.:|..:....:| .
Zfish    30 VPRLKPSYKEMLESNNLLTFNGLANSSAYHTFLLDEERGRLFVGAKDHVLSFNLVDINMDQQLIS 94

  Fly    95 WHSTDADRELCALKGKH-EWDCHNYLRVYALRPNGEVLL--CGTNSYKPRCRHYTPVEVSSEEAG 156
            |.|:.:.|:.|...||. :.:|.|:::|  |:|..:..|  |||.::.|.|.|.        |.|
Zfish    95 WPSSPSRRDECKWAGKDVQKECANFIKV--LQPFNQTHLYACGTGAFHPVCAHV--------EVG 149

  Fly   157 SAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATVADFSGGDPLIYR-----ENLR 216
            .....:..|...|.: ..:|..||.|...:.....||.||:.|.|||.|.|..|:|     ..:|
Zfish   150 KRSEDNTFRLGSSFE-NGRGKSPYDPKLQTASMLIDGELYAGTSADFMGRDFAIFRTLGKHHPIR 213

  Fly   217 TEQYDLKQLNQPDFVGA-------IERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPY 274
            |||:|.:.||.|.||..       ...:..:..||||.:::.....||.::|:.::||||.||..
Zfish   214 TEQHDSRWLNDPRFVSVHLIPESDNAEDDKIYLFFRENAIDGEQISKATHARIGQLCKNDFGGHR 278

  Fly   275 SHGKSWTSFLKARLNCSVPG--EFPFYFDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCA 336
            |....||:||||||.|||||  ....:|||:|.:..:.....|: :||||||||.|...|||||.
Zfish   279 SLVNKWTTFLKARLVCSVPGLNGIDTHFDELQDVFLMSSKDPKNPIIYAVFTTSSNIFKGSAVCM 343

  Fly   337 FNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPGQC-------VEDSRTLTSIAVNFIKNH 394
            :::.||...|.|.:..:......|:|. ..:||.||||.|       .|.::......:.|.::|
Zfish   344 YSMADIRRVFLGPYAHRDGPNYQWVPF-LNRVPYPRPGTCPSKTFDGFESTKDFPDDVITFARSH 407

  Fly   395 PLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHP 459
            |.|...|..::..|::.|.::.::.|.|.| .:|::..| .|||::.|||.|.|.|.::|    |
Zfish   408 PAMYNPVFPINNHPIIIKTDVDYQFTQIVV-DRVEAEDG-QYDVMFIGTDMGTVLKVVSI----P 466

  Fly   460 NSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLVVVSDGSLVSVPLHHCS-HIVDCLGCLSL 523
            ..|...|:.|::.||.|....|.|..:.:||.:..|.:.|...:..:|||.|. :...|..|...
Zfish   467 RGTWHDLEEVLLEEMTVFREPTAITAMELSTKQQQLYLGSAIGVSQMPLHRCDVYGKACAECCLA 531

  Fly   524 QDPICAWDLQTHEC-KNLATSQHKFGTK-----------TYLQSLNSTKKAAALLCPHIPRDAPG 576
            :||.||||  ..:| :...|::.:...:           :.||..:.....|.||    .:...|
Zfish   532 RDPYCAWD--GSQCSRYFPTAKRRTRRQDIRNGDPLTQCSDLQHHDEADGEAGLL----DKTVYG 590

  Fly   577 AE-TVSFVTMAPPPT------------EEQKLLYSN----VGSSQGNQ-PSLEQQPTG------- 616
            .| :.||:..:|...            |:.||...:    :|:.||.. .||.|:.:|       
Zfish   591 VENSSSFLECSPKSQRALIYWQFQRHGEDHKLEIKSDERVLGTEQGLLIRSLHQKDSGVYYCHAV 655

  Fly   617 --GDDFGLNKITLTSMDP---DDIM----PNLNDPQK---------------STASVDEI 652
              |....|.::||..:..   ||::    |:.|||..               |..|||::
Zfish   656 EHGFIQTLLRLTLNVIPAEHLDDLLHRDPPDTNDPANGKMWYRDFLSLINPPSPNSVDQL 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 158/482 (33%)
PSI 510..>537 CDD:214655 9/27 (33%)
sema3abNP_571136.1 Sema 27..519 CDD:472829 161/506 (32%)
PSI 517..>553 CDD:214655 11/37 (30%)
Ig_Sema3 582..673 CDD:409455 21/94 (22%)
Ig strand A 582..588 CDD:409455 2/9 (22%)
Ig strand B 593..601 CDD:409455 2/7 (29%)
Ig strand C 607..613 CDD:409455 0/5 (0%)
Ig strand C' 615..618 CDD:409455 0/2 (0%)
Ig strand D 628..632 CDD:409455 0/3 (0%)
Ig strand E 635..642 CDD:409455 2/6 (33%)
Ig strand F 648..657 CDD:409455 1/8 (13%)
Ig strand G 660..673 CDD:409455 3/12 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 727..778
Blue background indicates that the domain is not in the aligned region.

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