DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema1b and sema3ab

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_571136.1 Gene:sema3ab / 30267 ZFINID:ZDB-GENE-991209-6 Length:778 Species:Danio rerio


Alignment Length:710 Identity:206/710 - (29%)
Similarity:324/710 - (45%) Gaps:116/710 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 MPDVKP---DLQTKQDKVLAHFIGNSTDYFK-ILDHNDEFVLVGAKDVIYNVSLNGLKEIARL-E 94
            :|.:||   ::....:.:..:.:.||:.|.. :||.....:.|||||.:.:.:|..:....:| .
Zfish    30 VPRLKPSYKEMLESNNLLTFNGLANSSAYHTFLLDEERGRLFVGAKDHVLSFNLVDINMDQQLIS 94

  Fly    95 WHSTDADRELCALKGKH-EWDCHNYLRVYALRPNGEVLL--CGTNSYKPRCRHYTPVEVSSEEAG 156
            |.|:.:.|:.|...||. :.:|.|:::|  |:|..:..|  |||.::.|.|.|.        |.|
Zfish    95 WPSSPSRRDECKWAGKDVQKECANFIKV--LQPFNQTHLYACGTGAFHPVCAHV--------EVG 149

  Fly   157 SAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATVADFSGGDPLIYR-----ENLR 216
            .....:..|...|.: ..:|..||.|...:.....||.||:.|.|||.|.|..|:|     ..:|
Zfish   150 KRSEDNTFRLGSSFE-NGRGKSPYDPKLQTASMLIDGELYAGTSADFMGRDFAIFRTLGKHHPIR 213

  Fly   217 TEQYDLKQLNQPDFVGA-------IERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPY 274
            |||:|.:.||.|.||..       ...:..:..||||.:::.....||.::|:.::||||.||..
Zfish   214 TEQHDSRWLNDPRFVSVHLIPESDNAEDDKIYLFFRENAIDGEQISKATHARIGQLCKNDFGGHR 278

  Fly   275 SHGKSWTSFLKARLNCSVPG--EFPFYFDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCA 336
            |....||:||||||.|||||  ....:|||:|.:..:.....|: :||||||||.|...|||||.
Zfish   279 SLVNKWTTFLKARLVCSVPGLNGIDTHFDELQDVFLMSSKDPKNPIIYAVFTTSSNIFKGSAVCM 343

  Fly   337 FNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPGQC-------VEDSRTLTSIAVNFIKNH 394
            :::.||...|.|.:..:......|:|. ..:||.||||.|       .|.::......:.|.::|
Zfish   344 YSMADIRRVFLGPYAHRDGPNYQWVPF-LNRVPYPRPGTCPSKTFDGFESTKDFPDDVITFARSH 407

  Fly   395 PLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHP 459
            |.|...|..::..|::.|.::.::.|.|.| .:|::..| .|||::.|||.|.|.|.::|    |
Zfish   408 PAMYNPVFPINNHPIIIKTDVDYQFTQIVV-DRVEAEDG-QYDVMFIGTDMGTVLKVVSI----P 466

  Fly   460 NSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLVVVSDGSLVSVPLHHCS-HIVDCLGCLSL 523
            ..|...|:.|::.||.|....|.|..:.:||.:..|.:.|...:..:|||.|. :...|..|...
Zfish   467 RGTWHDLEEVLLEEMTVFREPTAITAMELSTKQQQLYLGSAIGVSQMPLHRCDVYGKACAECCLA 531

  Fly   524 QDPICAWDLQTHEC-KNLATSQHKFGTK-----------TYLQSLNSTKKAAALLCPHIPRDAPG 576
            :||.||||  ..:| :...|::.:...:           :.||..:.....|.||    .:...|
Zfish   532 RDPYCAWD--GSQCSRYFPTAKRRTRRQDIRNGDPLTQCSDLQHHDEADGEAGLL----DKTVYG 590

  Fly   577 AE-TVSFVTMAPPPT------------EEQKLLYSN----VGSSQGNQ-PSLEQQPTG------- 616
            .| :.||:..:|...            |:.||...:    :|:.||.. .||.|:.:|       
Zfish   591 VENSSSFLECSPKSQRALIYWQFQRHGEDHKLEIKSDERVLGTEQGLLIRSLHQKDSGVYYCHAV 655

  Fly   617 --GDDFGLNKITLTSMDP---DDIM----PNLNDPQK---------------STASVDEI 652
              |....|.::||..:..   ||::    |:.|||..               |..|||::
Zfish   656 EHGFIQTLLRLTLNVIPAEHLDDLLHRDPPDTNDPANGKMWYRDFLSLINPPSPNSVDQL 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 158/482 (33%)
PSI 510..>537 CDD:214655 9/27 (33%)
sema3abNP_571136.1 Sema 27..519 CDD:301699 161/506 (32%)
PSI 517..>553 CDD:214655 11/37 (30%)
Ig_Semaphorin_classIII 583..673 CDD:143279 21/93 (23%)
IG_like 586..654 CDD:214653 15/67 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 727..778
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.