DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema3aa

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_571135.1 Gene:sema3aa / 30266 ZFINID:ZDB-GENE-991209-3 Length:860 Species:Danio rerio


Alignment Length:586 Identity:183/586 - (31%)
Similarity:285/586 - (48%) Gaps:58/586 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 LAHFIG--NSTDYFK-ILDHNDEFVLVGAKDVIYNVSL-NGLKEIARLEWHSTDADRELCALKGK 110
            |..|.|  ||:.|.. ::|.....:||||:|.:::..| |..:::.::.|.:|.:.|:.|...||
Zfish    45 LVTFTGLANSSGYDTFLMDGERGRLLVGAEDHVFSFDLVNINRDVKQIAWPATPSKRDECKWAGK 109

  Fly   111 H-EWDCHNYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEA 174
            . ..||.|::||........:.:|||.::.|.|        |..|.|.....:..|.:.:.....
Zfish   110 DLRKDCSNFVRVLQSYNQTHIYICGTGAFHPIC--------SFLEMGKRAEDNIFRLDANYFENG 166

  Fly   175 QGLCPYSPAHNSTYAFADGHLYSATVADFSGGDPLIYR-----ENLRTEQYDLKQLNQPDFVGA- 233
            :|..||.|...|:....||.|||.|.|||.|.|..|:|     ..:||||:|.:.||:|.|:|. 
Zfish   167 RGKSPYDPKMQSSSLLLDGELYSGTSADFMGRDFAIFRTLGSHHPIRTEQHDSRWLNEPRFLGIH 231

  Fly   234 ------IERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSV 292
                  ...:..:..||:|.:|:..:.|||..||:.::||||.||..|....||:||||:|.|||
Zfish   232 LIPESDNPEDDKIFLFFKENAMDGEHTGKATISRIGQLCKNDMGGHRSLVNKWTTFLKAKLTCSV 296

  Fly   293 PG--EFPFYFDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQK 354
            ||  ....:|||:|.:..:.....|: :||||||||.|...|||:|.:::.||...|.|.:..:.
Zfish   297 PGLNGIDTHFDELQDVFLMSAKDPKNPVIYAVFTTSSNIFRGSAICMYSMADIRRVFLGPYAHRD 361

  Fly   355 DSQSHWLPVEREQVPKPRPGQC-------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTK 412
            .....|:|.: .:||.||||.|       .:.::.|....:.|.:.||.|...|..:.|:|::.:
Zfish   362 GPNYQWVPFQ-GRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARLHPAMYNPVQPMGGKPIVVR 425

  Fly   413 VNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVL 477
            .|:.::.|.:.| .:|::..| .|||::.|||.|.|.|.:.|    |..:...|:.||:.||.|.
Zfish   426 TNVEYQFTQLVV-DRVEAEDG-QYDVMFIGTDLGTVLKVVTI----PRESWHDLEEVVLEEMTVF 484

  Fly   478 PLGTPIRELVISTSKNSLVVVSDGSLVSVPLHHCS-HIVDCLGCLSLQDPICAWDLQTHECKNLA 541
            ...|||..:.:||.:..|.:.||..:..:|||.|. :...|..|...:||.||||  ..||....
Zfish   485 REPTPITAMELSTKQQQLYLGSDLGISQMPLHRCEVYGKACAECCLARDPYCAWD--GTECSRYF 547

  Fly   542 TSQHKFGTKTYLQSLNSTKKAAALLCPHIPRDAPGAETV----------SFVTMAPPPTEEQKLL 596
            .:..:   :|..|.:.:....:.....|...|..|..:|          |.:.:...|..::.|:
Zfish   548 PTAKR---RTRRQDIRNGDPLSQCSDLHHNDDLEGYSSVEERSVYGVENSSMFLECSPKSQRALI 609

  Fly   597 Y 597
            |
Zfish   610 Y 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 160/482 (33%)
PSI 510..>537 CDD:214655 9/27 (33%)
sema3aaNP_571135.1 Sema 26..519 CDD:472829 162/488 (33%)
PSI 517..569 CDD:214655 13/56 (23%)
Ig_Sema3 582..673 CDD:409455 5/29 (17%)
Ig strand A 582..588 CDD:409455 1/5 (20%)
Ig strand B 593..601 CDD:409455 1/7 (14%)
Ig strand C 607..613 CDD:409455 2/4 (50%)
Ig strand C' 615..618 CDD:409455
Ig strand D 628..632 CDD:409455
Ig strand E 635..642 CDD:409455
Ig strand F 648..657 CDD:409455
Ig strand G 660..673 CDD:409455
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 725..860
Pneumo_att_G <738..>859 CDD:114270
Blue background indicates that the domain is not in the aligned region.

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