DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema3h

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001315307.1 Gene:sema3h / 30252 ZFINID:ZDB-GENE-990715-8 Length:749 Species:Danio rerio


Alignment Length:523 Identity:164/523 - (31%)
Similarity:253/523 - (48%) Gaps:56/523 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 DHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADR-ELCALKGKH-EWDCHNYLRVYALRPN 127
            |.:...:.:|.||.:.:.||:.:.:..|..:...:.|| :.|.:.||. |.||.|:|||......
Zfish    54 DEDGRRLYIGMKDHLLSTSLDDITQNPRKIYWPANPDRIQDCTMAGKTLEMDCANFLRVLERYNQ 118

  Fly   128 GEVLLCGTNSYKPRCRHY-TPVEVSSEEAGSAGHAHAMRYEVSRDVEA-QGLCPYSPAHNSTYAF 190
            ..:..|||.::.|||... |.:.:.:||       ..::.|   |.|: :|.||:.|...:..|.
Zfish   119 THLYACGTGAFNPRCAFIPTNLFLRAEE-------QTLQDE---DTESGRGKCPFDPHQRTATAI 173

  Fly   191 ADGHLYSATVADFSGGD-----PLIYRENLRTEQYDLKQLNQPDFVGAI-------ERNGYVLFF 243
            .||.||:...:||...|     .|..|..:||||||...|...:||...       |.:..|..|
Zfish   174 IDGELYAGISSDFLSHDTAFIRSLGERHVIRTEQYDSTWLQGAEFVHVTAMSESDNEEDDKVYVF 238

  Fly   244 FRELSMEVMN-FGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FPFYFDEIQA 305
            |.|.:.|... .||.:|||||||||||.||..|....|::|.|||:.|||||.  ...:||::|.
Zfish   239 FTERAQEAEGAAGKVLYSRVARVCKNDIGGQRSLVNKWSTFQKARIVCSVPGPDGIQTHFDKLQD 303

  Fly   306 ISPIVESG---SKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQ 367
            |  .::.|   ...|:|.:|||:.|.:.|||||.:.:.||:.||.|.| ..::...:.|.....:
Zfish   304 I--FIQHGRDKKNPLVYGLFTTTSNVLNGSAVCVYRMQDIIRAFKGNF-LHREGHQYKLTEYTGR 365

  Fly   368 VPKPRPGQC-------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVH 425
            ||.||||.|       ...:|......:.|.:.||||:|.|..:.|:|||.:|.:.::||.:.| 
Zfish   366 VPYPRPGTCPSSTYGGFRSTREYPDDVIFFSRTHPLMQEVVRPLGGQPLLIRVGVPYKLTRLLV- 429

  Fly   426 PQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVIST 490
            .:|:::.| .:||::.|||.|.|.|.::....:..:     :.|.:.::||....:.|..:.:|.
Zfish   430 DRVEAVDG-QHDVMFIGTDSGLVLKVLHFPKANRQN-----QEVTLEQLQVFKHKSAITAMTLSK 488

  Fly   491 SKNSLVVVSDGSLVSVPLHHCS-HIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYLQ 554
            .|..|...|...:|.:.|..|. :...|..|...:||.|.||  .|.|.....:    |.:..::
Zfish   489 KKQWLFAGSAEGVVQLGLFQCDLYGQACAECCLARDPYCTWD--GHSCSQFMPT----GRRRNIR 547

  Fly   555 SLN 557
            .:|
Zfish   548 QVN 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 152/474 (32%)
PSI 510..>537 CDD:214655 9/27 (33%)
sema3hNP_001315307.1 Sema_3 39..509 CDD:200500 152/474 (32%)
PSI 508..>544 CDD:214655 11/41 (27%)
Ig_Semaphorin_C 570..661 CDD:143180
IG_like 573..658 CDD:214653
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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