DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema3h

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001315307.1 Gene:sema3h / 30252 ZFINID:ZDB-GENE-990715-8 Length:749 Species:Danio rerio


Alignment Length:523 Identity:164/523 - (31%)
Similarity:253/523 - (48%) Gaps:56/523 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 DHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADR-ELCALKGKH-EWDCHNYLRVYALRPN 127
            |.:...:.:|.||.:.:.||:.:.:..|..:...:.|| :.|.:.||. |.||.|:|||......
Zfish    54 DEDGRRLYIGMKDHLLSTSLDDITQNPRKIYWPANPDRIQDCTMAGKTLEMDCANFLRVLERYNQ 118

  Fly   128 GEVLLCGTNSYKPRCRHY-TPVEVSSEEAGSAGHAHAMRYEVSRDVEA-QGLCPYSPAHNSTYAF 190
            ..:..|||.::.|||... |.:.:.:||       ..::.|   |.|: :|.||:.|...:..|.
Zfish   119 THLYACGTGAFNPRCAFIPTNLFLRAEE-------QTLQDE---DTESGRGKCPFDPHQRTATAI 173

  Fly   191 ADGHLYSATVADFSGGD-----PLIYRENLRTEQYDLKQLNQPDFVGAI-------ERNGYVLFF 243
            .||.||:...:||...|     .|..|..:||||||...|...:||...       |.:..|..|
Zfish   174 IDGELYAGISSDFLSHDTAFIRSLGERHVIRTEQYDSTWLQGAEFVHVTAMSESDNEEDDKVYVF 238

  Fly   244 FRELSMEVMN-FGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FPFYFDEIQA 305
            |.|.:.|... .||.:|||||||||||.||..|....|::|.|||:.|||||.  ...:||::|.
Zfish   239 FTERAQEAEGAAGKVLYSRVARVCKNDIGGQRSLVNKWSTFQKARIVCSVPGPDGIQTHFDKLQD 303

  Fly   306 ISPIVESG---SKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQ 367
            |  .::.|   ...|:|.:|||:.|.:.|||||.:.:.||:.||.|.| ..::...:.|.....:
Zfish   304 I--FIQHGRDKKNPLVYGLFTTTSNVLNGSAVCVYRMQDIIRAFKGNF-LHREGHQYKLTEYTGR 365

  Fly   368 VPKPRPGQC-------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVH 425
            ||.||||.|       ...:|......:.|.:.||||:|.|..:.|:|||.:|.:.::||.:.| 
Zfish   366 VPYPRPGTCPSSTYGGFRSTREYPDDVIFFSRTHPLMQEVVRPLGGQPLLIRVGVPYKLTRLLV- 429

  Fly   426 PQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVIST 490
            .:|:::.| .:||::.|||.|.|.|.::....:..:     :.|.:.::||....:.|..:.:|.
Zfish   430 DRVEAVDG-QHDVMFIGTDSGLVLKVLHFPKANRQN-----QEVTLEQLQVFKHKSAITAMTLSK 488

  Fly   491 SKNSLVVVSDGSLVSVPLHHCS-HIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYLQ 554
            .|..|...|...:|.:.|..|. :...|..|...:||.|.||  .|.|.....:    |.:..::
Zfish   489 KKQWLFAGSAEGVVQLGLFQCDLYGQACAECCLARDPYCTWD--GHSCSQFMPT----GRRRNIR 547

  Fly   555 SLN 557
            .:|
Zfish   548 QVN 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 152/474 (32%)
PSI 510..>537 CDD:214655 9/27 (33%)
sema3hNP_001315307.1 Sema_3 39..509 CDD:200500 152/474 (32%)
PSI 508..>544 CDD:214655 11/41 (27%)
Ig_Sema3 569..661 CDD:409455
Ig strand A 569..575 CDD:409455
Ig strand B 580..588 CDD:409455
Ig strand C 594..600 CDD:409455
Ig strand C' 602..605 CDD:409455
Ig strand D 616..620 CDD:409455
Ig strand E 623..630 CDD:409455
Ig strand F 636..645 CDD:409455
Ig strand G 648..661 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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