DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and Sema4c

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_006244820.1 Gene:Sema4c / 301346 RGDID:1562837 Length:856 Species:Rattus norvegicus


Alignment Length:673 Identity:192/673 - (28%)
Similarity:298/673 - (44%) Gaps:111/673 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AAMLVNAIPMILLITLSGLTIVAGWMPDVKP-------DLQTKQDKVLAHFIGNSTDYFKILDHN 67
            :||..:....:|...|.||.|.|....::.|       :|.|    |:..|.......|..|...
  Rat    21 SAMAPHWAVWLLAAGLWGLGIGAEMWWNLAPRKTVSSGELVT----VVRRFSQTGIQDFLTLTLT 81

  Fly    68 DE--FVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGK-HEWDCHNYLRVYALRPNGE 129
            |.  .:.|||::.::..|:..|:....:.|.:....:..|..||| ::.:|.|::|.........
  Rat    82 DRSGLLYVGAREALFAFSVEALELQGVISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNASH 146

  Fly   130 VLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGH 194
            :.:|||.:::|:|.:...:..:.:.|         .:|     :.:|.|||.||...|....||.
  Rat   147 LYVCGTYAFQPKCTYINMLTFTLDRA---------EFE-----DGKGKCPYDPAKGHTGLLVDGE 197

  Fly   195 LYSATVADFSGGDPLIYR-----ENLRTEQYDLKQLNQPDFVGAI---ERNG-------YVLFFF 244
            |||||:.:|.|.:|:|.|     ..::|| |....||:|.|||:.   |..|       .:.|||
  Rat   198 LYSATLNNFLGTEPVILRNMGPHHPIKTE-YLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFF 261

  Fly   245 RELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQAISPI 309
            .|.::|...:.:.|.:|||||||.|.||..:..|.||:||||||.||.| ::..||::::|:..:
  Rat   262 SERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAP-DWKVYFNQLRAVHTL 325

  Fly   310 V-ESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRP 373
            : .|...:..:|||......:..||||.:.::.|...|:|.||...:....|... .:.||.|||
  Rat   326 LGASWHNTTFFAVFQARWGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWARY-TDPVPTPRP 389

  Fly   374 GQCVED---------SRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTK--VNLHHRLTAIAVHPQ 427
            |.|:.:         |..|....:||||.||||||.|....|||||.|  .|..|     .|..:
  Rat   390 GSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTH-----VVADR 449

  Fly   428 VKSLSGAYYDVIYSGTDDGKVTKFINILS-THPNSTVDRLKTVVISEMQVLPLGTPIRELVISTS 491
            :..|.||.|.|::.||.||.:.|.:::.. .|           ::.|:||.. ..|:..||:|.|
  Rat   450 ILGLDGATYTVLFIGTGDGWLLKAVSLGPWIH-----------MVEELQVFD-QEPVESLVLSQS 502

  Fly   492 KNSLVVVSDGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYLQSL 556
            |..|...|...||.:.|..|:....|:.|:..:||.|||::.|..|  :||..|           
  Rat   503 KKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRC--VATGGH----------- 554

  Fly   557 NSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKL-------------LYSNVGSS----Q 604
                 :.:||..|:....|....:.:......|...:.:             |.||:..:    :
  Rat   555 -----SGSLLVQHVANLDPSKMCIQYAIKKARPVVPKNITVVAGTDLVLPCHLSSNLAHALWTFR 614

  Fly   605 GNQPSLEQQPTGGDDFGLNKITL 627
            |.....||..:...|.||..:.:
  Rat   615 GRDLPAEQPGSFLYDTGLQALVV 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 152/486 (31%)
PSI 510..>537 CDD:214655 9/26 (35%)
Sema4cXP_006244820.1 Sema_4C 64..520 CDD:200519 152/489 (31%)
PSI 521..>550 CDD:214655 10/30 (33%)
IG_like 585..659 CDD:214653 9/53 (17%)
Ig 586..670 CDD:299845 9/52 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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