DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and Sema6c

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_059004.1 Gene:Sema6c / 29744 RGDID:3659 Length:960 Species:Rattus norvegicus


Alignment Length:756 Identity:232/756 - (30%)
Similarity:330/756 - (43%) Gaps:178/756 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 NAIPMILLITLSGLTIVAGWMPDVKP----DLQTK---------QDKVLAHFIGNSTDYFKILDH 66
            :::|::||:.||.......:..|..|    |||..         :|..:|..:|  .|:.:.|..
  Rat     6 HSMPLLLLLLLSLPQAQTAFPQDPIPLLTSDLQGTSPSSWFRGLEDDAVAAELG--LDFQRFLTL 68

  Fly    67 NDEFVLVGAKDVIYNVSL------NGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLRVYALR 125
            | ..:||.|:|.:::..|      .||.....|.|.|  .|.|.||::||...:|:||:||....
  Rat    69 N-RTLLVAARDHVFSFDLQAQEEGEGLVPNKFLTWRS--QDMENCAVRGKLTDECYNYIRVLVPW 130

  Fly   126 PNGEVLLCGTNSYKPRCRHY--TPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTY 188
            .:..:|.|||||:.|.||.|  |.::...||                 :..|..||:....::..
  Rat   131 DSQTLLACGTNSFSPVCRSYGITSLQQEGEE-----------------LSGQARCPFDATQSTVA 178

  Fly   189 AFADGHLYSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAIERNGYVLFFFRELS 248
            ..|:|.|||||.|||...|.::||.     .||:.:||.|.|.:|.||.|:|...:|.|||||:|
  Rat   179 ISAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVYALEHGDHVYFFFREVS 243

  Fly   249 MEVMNFGKAVYSRVARVCKNDRGG-PYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQAISPIVES 312
            :|....|:..:||||||||.|.|| |.:..:.||||||.||||||||:..||||.:|:::..|..
  Rat   244 VEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNL 308

  Fly   313 GSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPGQCV 377
            ..:|.::.||||..|:|||||||||.:|||...|:|:||.|:.....|.||..::||.||||.|.
  Rat   309 HGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDKVPSPRPGSCA 373

  Fly   378 --------EDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQ--VKSLS 432
                    ..|:.|....:.|||.|||::.|||....:||||       ||:.|:..|  |..::
  Rat   374 GVGAAALFSSSQDLPDDVLLFIKAHPLLDPAVPPATHQPLLT-------LTSRALLTQVAVDGMA 431

  Fly   433 GAYYD--VIYSGTDDGKVTKFI----NILSTHPNSTVDRLKTVVISEMQVLP-----------LG 480
            |.:.:  |::.|::||.|.|.:    ..|...|         :::.|:....           ..
  Rat   432 GPHRNTTVLFLGSNDGTVLKVLPPGGQSLGPEP---------IILEEIDAYSHARCSGKRSPRAA 487

  Fly   481 TPIRELVISTSKNSLVVVSDGSLVSVPLHHCSHIVDC-LGCLSLQDPICAWDLQTHECKNLATSQ 544
            ..|..|.:.|..:.|.|...|.:|.:.|..|:....| ..||:..||.|.|              
  Rat   488 RRIIGLELDTEGHRLFVAFPGCIVYLSLSRCARHGACQRSCLASLDPYCGW-------------- 538

  Fly   545 HKFGTKTYLQSLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQGNQPS 609
            |:|..                 |.:|  ..||...|...                     |||.|
  Rat   539 HRFRG-----------------CVNI--RGPGGTDVDLT---------------------GNQES 563

  Fly   610 LE----------QQPTGGDD----FGLNKITLTSMDPDDIMPNLNDPQKST--ASVDEIKYASTP 658
            :|          .|...||.    .|......|...|.|..|.   ||.||  |....::...:|
  Rat   564 MEHGDCQDGATGSQSGPGDSAYVLLGPGPSPETPSSPSDAHPG---PQSSTLGAHTQGVRRDLSP 625

  Fly   659 S-------FMLLTTIVFFTFLVG-GIAGI----CCVKAKSR 687
            :       ..||...|...|.:| .::|:    .|.:|..|
  Rat   626 ASASRSIPIPLLLACVAAAFALGASVSGLLVSCACRRANRR 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 177/496 (36%)
PSI 510..>537 CDD:214655 8/27 (30%)
Sema6cNP_059004.1 Sema 52..516 CDD:472829 177/501 (35%)
PSI 517..>538 CDD:396154 7/20 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 555..624 19/92 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 685..725
PHA03307 730..>956 CDD:223039
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 745..792
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 806..960
Blue background indicates that the domain is not in the aligned region.

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