Protein Alignment Sema1b and Sema3e

DIOPT Version :9

• Sequence 1: NP_001163178.1
• Gene: Sema1b / 37007
• FlyBaseID: FBgn0016059
• Length: 770
• Species: Drosophila melanogaster
• Sequence 2: NP_001100049.1
• Gene: Sema3e / 296789
• RGDID: 1310973
• Length: 775
• Species: Rattus norvegicus
• Alignment Length: 642
• Identity: 182/642 - (28%)
• Similarity: 295/642 - (45%)
• Gaps: 99/642 - (15%)

  Fly    20 ILLITLSGLTIVAGWMPDVK-----PDLQTKQDKVLAHFIGNSTDYFK-----------ILDHND 68
            ||.:.|.| .::..|.|...     |.|:....::|..   |.|..|:           :||...
  Rat     7 ILTLLLWG-HLLELWTPGYTANPSYPRLRLSHKELLEL---NRTSIFQSPFGFLDLHTMLLDEYQ 67

  Fly    69 EFVLVGAKDVIYNVSL----NGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLRVYALRPNGE 129
            |.:.||.:|::|:::|    :|.:||   .|.||....|.|.:|||...:|.||:||........
  Rat    68 ERLFVGGRDLVYSLNLERVSDGYREI---YWPSTAVKVEECIMKGKDANECANYVRVLHHYNRTH 129

  Fly   130 VLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGH 194
            :|.|.|.::.|.|..   :.|.........|..:.|.|..|     |.||:.|..:.........
  Rat   130 LLTCATGAFDPHCAF---IRVGHHSEDPLFHLESHRSERGR-----GRCPFDPNSSFVSTLVGNE 186

  Fly   195 LYSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAI-------ERNGYVLFFFREL 247
            |::...:|:.|.|..|:|.     ::|||..|.:.|.:|.|||:.       ..:..:.|||.|.
  Rat   187 LFAGLYSDYWGRDSAIFRSLGKLGHIRTEHDDERLLKEPKFVGSYMIPDNEDPEDNKMYFFFTEK 251

  Fly   248 SMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPG--EFPFYFDEIQAISPIV 310
            ::|..|....:|:||.|:|.||.||.......|::||||||.|||||  ....:|||::.:..:.
  Rat   252 ALEAENNAHTIYTRVGRLCVNDMGGQRILVNKWSTFLKARLVCSVPGMNGIDTHFDELEDVFLLP 316

  Fly   311 ESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPG 374
            ....|: :|:.:|.|:.|...|.|||.:::..|..||:|.:..::..:.||...| .:||.||||
  Rat   317 TRDPKNPVIFGLFNTTSNIFRGHAVCVYHMSSIREAFNGPYAHKEGPEYHWSLYE-GKVPYPRPG 380

  Fly   375 QCVE--------DSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSL 431
            .|..        .::.....|:.|.:.||||.:.:..||.:|:|.|.:..:.|..:|| .:|::.
  Rat   381 SCASKVNGGKYGSTKDYPDDAIRFARMHPLMYQPIKPVHKKPILVKTDGKYNLRQLAV-DRVEAE 444

  Fly   432 SGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLV 496
            .| .|||::.|||.|.|.|.|.|.    |...:.::.|::.|:|:.....||..:.||:.:..|.
  Rat   445 DG-QYDVLFIGTDTGIVLKVITIY----NQETEWMEEVILEELQIFKDPAPIISMEISSKRQQLY 504

  Fly   497 VVSDGSLVSVPLHHC----SHIVDCLGCLSLQDPICAWD-----------------LQTHECKNL 540
            :.|..::..|..|||    |...||  ||: :||.||||                 .:..:.::.
  Rat   505 IGSASAVAQVRFHHCDMYGSACADC--CLA-RDPYCAWDGISCSRYYPTGAHSKRRFRRQDVRHG 566

  Fly   541 ATSQHKFGTKTYLQSLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLY 597
            ..:|..||.:....:|:.|::          |.|.|.|:.|.:....|.:.:.|:::
  Rat   567 NAAQQCFGQQFVGDALDRTEE----------RLAYGIESNSTLLECTPRSLQAKVVW 613

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sema1b	NP_001163178.1	Sema_1A	55..511	CDD:200498	148/493 (30%)
		PSI	510..>537	CDD:214655	13/47 (28%)
Sema3e	NP_001100049.1	Sema_3E	49..519	CDD:200514	146/487 (30%)
		PSI	518..566	CDD:214655	13/50 (26%)
		Ig_Semaphorin_classIII	585..675	CDD:143279	8/39 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3611
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11036
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.910