DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and Sema3g

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001094352.1 Gene:Sema3g / 290562 RGDID:1306079 Length:780 Species:Rattus norvegicus


Alignment Length:670 Identity:197/670 - (29%)
Similarity:290/670 - (43%) Gaps:118/670 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 LDHNDEFVLVGAKDVIYNVSLNGL----KEIARLEWHSTDADRELCALKGKHE-WDCHNYLRVYA 123
            ||...:.:.:|.:|.:|::.|:..    :|:.   |......:..|..|||.. .:|.|::||  
  Rat    64 LDEYRDRLFLGGRDALYSLRLDQAWPDPREVL---WPPQPGQKVECVRKGKDPLTECANFVRV-- 123

  Fly   124 LRPNG--EVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGH--AHAMRYEVSRDVEAQGLCPYSPAH 184
            |:|:.  .:|.|||.:::|.|...|           .||  .|.:..:.|.....:|.||:.|:.
  Rat   124 LQPHNRTHLLACGTGAFQPICTFIT-----------VGHRGEHVLHLDPSSIENGRGRCPHEPSR 177

  Fly   185 NSTYAFADGHLYSATVADFSGGDPLIYREN-----LRTEQYDLKQLNQPDFVGA--IERNG---- 238
            .....|..|.||:...|||.|.:.:|:|..     ||::. |...|:.|.||.|  |..|.    
  Rat   178 PFASTFVGGELYTGLTADFLGREAMIFRSGGPRPALRSDS-DQSLLHDPRFVMAARIPDNSDRDD 241

  Fly   239 -YVLFFFRE-LSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FPFY 299
             .|.|||.| :.......|....|||.|||.||.||.......|::||||||.|||||.  ...:
  Rat   242 DKVYFFFSETVPSPDGGPGHVTVSRVGRVCVNDAGGQRVLVNKWSTFLKARLVCSVPGPGGAETH 306

  Fly   300 FDEIQAISPIVESGSKSL-IYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPV 363
            ||:::.:..:.....|:| :||:|:|......|.|||.:::.||...|:|.|..:...|..|.|.
  Rat   307 FDQLEDVFLLWPKAGKNLEVYALFSTVSAVFRGFAVCVYHMVDIWEVFNGPFAHRDGPQHQWGPY 371

  Fly   364 EREQVPKPRPGQC-----VEDSRTLTSI------AVNFIKNHPLMEEAVPAVHGRPLLTKVNLHH 417
             ..:||.||||.|     .:..|...|.      .:.|::.||||.:.|....|||:|.|.:|..
  Rat   372 -GGKVPFPRPGVCPSKMTAQPGRPFGSTKDYPDEVLQFVRGHPLMFQPVRPRRGRPVLVKTHLAQ 435

  Fly   418 RLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTP 482
            :|..|.| .:|::..|. ||||:.|||.|.|.|.|.:    ..|.:...:.||:.|:||..:.||
  Rat   436 QLCQIVV-DRVEAEDGT-YDVIFLGTDSGSVLKIIAL----QGSGLPEPEEVVLEELQVFKVPTP 494

  Fly   483 IRELVISTSKNSLVVVSDGSLVSVPLHHC-SHIVDCLGCLSLQDPICAWDLQT------------ 534
            |.|:.||..:.:|.|.|...:..:.||.| ::...|..|...:||.||||..:            
  Rat   495 ITEMEISVKRQTLYVGSPLGVARLQLHQCETYGSACAECCLARDPYCAWDGTSCARYRPSSGKRR 559

  Fly   535 -------H-----ECKNLATSQHK--------FGTK---TYLQSLNSTKKAAALLCPHIPRDAPG 576
                   |     :|.....||.|        |||:   |:|:....:.:||.......|.| .|
  Rat   560 FRRQDIRHGNPAVQCLGQGQSQDKASGLVTRVFGTEHNSTFLECRPKSPQAAVRWFLQRPGD-KG 623

  Fly   577 AETVSFVTMAPPPTEE------QKLLYSNVGSSQGNQPSLEQQPTGGDD----FGLNKITLTSMD 631
            |:.|.        |:|      |.||:..:........:......|...    |.|..|....:|
  Rat   624 ADQVK--------TDERVVQTDQGLLFRRLSRLDAGNYTCTTLEHGFSQTVVRFALEVIAAVQLD 680

  Fly   632 PDDIM-PNLNDPQ--KSTAS 648
            ...:. |.|.:|.  :|.||
  Rat   681 SLFLREPRLEEPSAWRSVAS 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 155/482 (32%)
PSI 510..>537 CDD:214655 10/51 (20%)
Sema3gNP_001094352.1 Sema 50..523 CDD:301699 155/482 (32%)
PSI 522..568 CDD:214655 9/45 (20%)
Ig_Semaphorin_classIII 591..676 CDD:143279 21/93 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.910

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