Protein Alignment Sema1b and Sema3d

DIOPT Version :9

• Sequence 1: NP_001163178.1
• Gene: Sema1b / 37007
• FlyBaseID: FBgn0016059
• Length: 770
• Species: Drosophila melanogaster
• Sequence 2: NP_001098103.1
• Gene: Sema3d / 246262
• RGDID: 727939
• Length: 777
• Species: Rattus norvegicus
• Alignment Length: 583
• Identity: 184/583 - (31%)
• Similarity: 294/583 - (50%)
• Gaps: 65/583 - (11%)

  Fly     6 RPSSAAMLVNAIPMILLITLSGLTIVAGWMPDVKPDLQ-TKQDKVLAH----FIGNS--TDY-FK 62
            ||.|..:.:....|:|::|:..|.:......:: |.|: |.:|.:|::    |:|:|  .|: ..
  Rat    10 RPRSQDLHLFHAGMMLIVTVLYLPVTETSKQNI-PRLKLTYKDLLLSNTCIPFLGSSEGLDFQTL 73

  Fly    63 ILDHNDEFVLVGAKDVIYNVSLNGL-KEIARLEWHSTDADRELCALKGKH-EWDCHNYLRVYALR 125
            :||.....:|:||||.::.::|..| |...::.|.:.....|||.|.||. ..:|.|::||  |:
  Rat    74 LLDEERGILLLGAKDHVFLLNLVDLNKNFKKIYWPAAKERVELCKLAGKDANTECANFIRV--LQ 136

  Fly   126 PNGE--VLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVS-RDVEAQGL-CPYSPAHNS 186
            |..:  |.:|||.::.|.| .|..:..:.||         :.:::. :::|:..| ||:.|....
  Rat   137 PYNKTHVYVCGTGAFHPLC-GYIDLGANKEE---------LIFKLDMQNLESGRLKCPFDPQQPF 191

  Fly   187 TYAFADGHLYSATVADFSGGDPLIYR--------ENLRTEQYDLKQLNQPDFVGAI-------ER 236
            .....|.||||.|.:||.|.|....|        ..:||:..:...||...|:|..       ..
  Rat   192 ASVMTDEHLYSGTASDFLGKDTAFTRSLGLMQDHHYIRTDISEHYWLNGAKFIGTFPIPDTYNPD 256

  Fly   237 NGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FPFY 299
            :..:.|||||.|.|.....:::.|||.||||||.||..|....||:||||||.||:||.  ...:
  Rat   257 DDKIYFFFRESSQEGSTSDRSILSRVGRVCKNDVGGQRSLINKWTTFLKARLVCSIPGSDGADTH 321

  Fly   300 FDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPV 363
            |||:|.|..:.....:: ::|.||||:.:...|||||.:::.||.|.|:|.:..::.:...|:..
  Rat   322 FDELQDIYLLPTRDERNPVVYGVFTTTSSIFKGSAVCVYSMADIRAVFNGPYAHKESADHRWVQY 386

  Fly   364 EREQVPKPRPGQC--------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLT 420
            : .::|.||||.|        ::.:|......::||:.||:|.::|..|.|.|...::|:.:|||
  Rat   387 D-GRIPYPRPGTCPSKTYDPLIKSTRDFPDDVISFIRRHPVMYKSVYPVAGAPTFKRINVDYRLT 450

  Fly   421 AIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRE 485
            .|.|...|  .....|||::.|||.|.|.|.::|.....|     ::.||:.|:||....|.|..
  Rat   451 QIVVDHVV--AEDGQYDVMFLGTDIGTVLKVVSISKEKWN-----MEEVVLEELQVFKHPTAILN 508

  Fly   486 LVISTSKNSLVVVSDGSLVSVPLHHC-SHIVDCLGCLSLQDPICAWDLQTHECKNLA-TSQHK 546
            :.:|..:..|.|.|...||.:.||.| ::...|..|...:||.||||  .:.|...| ||:.:
  Rat   509 MELSLKQQQLYVGSWDGLVQLSLHRCDTYGKACADCCLARDPYCAWD--GNACSRYAPTSKRR 569

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sema1b	NP_001163178.1	Sema_1A	55..511	CDD:200498	158/490 (32%)
		PSI	510..>537	CDD:214655	9/27 (33%)
Sema3d	NP_001098103.1	Sema_3D	61..534	CDD:200513	159/492 (32%)
		PSI	533..570	CDD:214655	13/39 (33%)
		Ig_Sema3	595..686	CDD:409455
		Ig strand B	609..613	CDD:409455
		Ig strand C	621..625	CDD:409455
		Ig strand E	648..652	CDD:409455
		Ig strand F	662..667	CDD:409455
		Ig strand G	679..682	CDD:409455

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3611
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11036
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.910