DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and SEMA3D

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_689967.2 Gene:SEMA3D / 223117 HGNCID:10726 Length:777 Species:Homo sapiens


Alignment Length:571 Identity:180/571 - (31%)
Similarity:285/571 - (49%) Gaps:63/571 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PMILLITLSGLTI-VAGWMPDVKPDLQ-TKQDKVLAH----FIGNS--TDY-FKILDHNDEFVLV 73
            |.:::::::.|.: |.|.:....|.|: |.:|.:|::    |:|:|  .|: ..:||.....:|:
Human    20 PALMMLSMTMLFLPVTGTLKQNIPRLKLTYKDLLLSNSCIPFLGSSEGLDFQTLLLDEERGRLLL 84

  Fly    74 GAKDVIYNVSLNGL-KEIARLEWHSTDADRELCALKGKH-EWDCHNYLRVYALRPNGE--VLLCG 134
            ||||.|:.:||..| |...::.|.:.....|||.|.||. ..:|.|::||  |:|..:  :.:||
Human    85 GAKDHIFLLSLVDLNKNFKKIYWPAAKERVELCKLAGKDANTECANFIRV--LQPYNKTHIYVCG 147

  Fly   135 TNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGL-CPYSPAHNSTYAFADGHLYSA 198
            |.::.|.| .|..:.|..|:.......|        ::|:..| ||:.|.........|.:|||.
Human   148 TGAFHPIC-GYIDLGVYKEDIIFKLDTH--------NLESGRLKCPFDPQQPFASVMTDEYLYSG 203

  Fly   199 TVADFSGGDPLIYR--------ENLRTEQYDLKQLNQPDFVGAI-------ERNGYVLFFFRELS 248
            |.:||.|.|....|        ..:||:..:...||...|:|..       ..:..:.|||||.|
Human   204 TASDFLGKDTAFTRSLGPTHDHHYIRTDISEHYWLNGAKFIGTFFIPDTYNPDDDKIYFFFRESS 268

  Fly   249 MEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FPFYFDEIQAISPIVE 311
            .|.....|.:.|||.||||||.||..|....||:||||||.||:||.  ...||||:|.|..:..
Human   269 QEGSTSDKTILSRVGRVCKNDVGGQRSLINKWTTFLKARLICSIPGSDGADTYFDELQDIYLLPT 333

  Fly   312 SGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPGQ 375
            ...:: ::|.||||:.:...|||||.:::.||.|.|:|.:..::.:...|:..: .::|.||||.
Human   334 RDERNPVVYGVFTTTSSIFKGSAVCVYSMADIRAVFNGPYAHKESADHRWVQYD-GRIPYPRPGT 397

  Fly   376 C--------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLS 432
            |        ::.:|......::|||.|.:|.::|..|.|.|...::|:.:|||.|.|...:  ..
Human   398 CPSKTYDPLIKSTRDFPDDVISFIKRHSVMYKSVYPVAGGPTFKRINVDYRLTQIVVDHVI--AE 460

  Fly   433 GAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLVV 497
            ...|||::.|||.|.|.|.::|.....|     ::.||:.|:|:....:.|..:.:|..:..|.:
Human   461 DGQYDVMFLGTDIGTVLKVVSISKEKWN-----MEEVVLEELQIFKHSSIILNMELSLKQQQLYI 520

  Fly   498 VSDGSLVSVPLHHC-SHIVDCLGCLSLQDPICAWDLQTHECKNLA-TSQHK 546
            .|...||.:.||.| ::...|..|...:||.||||  .:.|...| ||:.:
Human   521 GSRDGLVQLSLHRCDTYGKACADCCLARDPYCAWD--GNACSRYAPTSKRR 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 157/489 (32%)
PSI 510..>537 CDD:214655 9/27 (33%)
SEMA3DNP_689967.2 Sema_3D 61..534 CDD:200513 158/491 (32%)
PSI 533..570 CDD:214655 13/39 (33%)
Ig_Sema3 595..686 CDD:409455
Ig strand A 595..601 CDD:409455
Ig strand B 606..614 CDD:409455
Ig strand C 620..626 CDD:409455
Ig strand C' 628..631 CDD:409455
Ig strand D 641..645 CDD:409455
Ig strand E 648..655 CDD:409455
Ig strand F 661..670 CDD:409455
Ig strand G 673..686 CDD:409455
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 738..777
Blue background indicates that the domain is not in the aligned region.

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