DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and Sema7a

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_035482.1 Gene:Sema7a / 20361 MGIID:1306826 Length:664 Species:Mus musculus


Alignment Length:633 Identity:156/633 - (24%)
Similarity:258/633 - (40%) Gaps:139/633 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KSRPSSAAMLVNAIP---------MILLI-----------TLSGLTIVAGWMPDVKPDL-QTKQD 47
            ::.||:....|.::|         .:||:           :.||..|.|.|......|. |.:..
Mouse     8 RAAPSAPRARVLSLPARFGLPLRLRLLLVFWVAAASAQGHSRSGPRISAVWKGQDHVDFSQPEPH 72

  Fly    48 KVLAHFIGNSTDYFKILDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGKHE 112
            .||.|..|:.:            |.||.:..:|:.:....|. |.:...:..:.:..|    :.:
Mouse    73 TVLFHEPGSFS------------VWVGGRGKVYHFNFPEGKN-ASVRTVNIGSTKGSC----QDK 120

  Fly   113 WDCHNYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGL 177
            .||.||:.:...|.|| :|:||||:.||.|.:.    |:.....|.|             |.:|.
Mouse   121 QDCGNYITLLERRGNG-LLVCGTNARKPSCWNL----VNDSVVMSLG-------------EMKGY 167

  Fly   178 CPYSPAHNSTYAFADGHLYSATV--ADFSGGDPLIYRENLRTEQYDLKQLNQ-PDFVGAI---ER 236
            .|:||..||...|....:|| |:  .:::|..|...|....:|.|....:.| |.|:.|.   :.
Mouse   168 APFSPDENSLVLFEGDEVYS-TIRKQEYNGKIPRFRRIRGESELYTSDTVMQNPQFIKATIVHQD 231

  Fly   237 NGY---VLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKS-WTSFLKARLNCSVPGEFP 297
            ..|   :.:||||.:.:.........||||::|:.|:||..|...| |.:||||.|.|| .....
Mouse   232 QAYDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCS-DAATN 295

  Fly   298 FYFDEIQAISPIVESGSK---SLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSH 359
            ..|:.:|.:..:.:...:   :.:|.||:...|.   ||||.:::.||    |..|::......|
Mouse   296 RNFNRLQDVFLLPDPSGQWRDTRVYGVFSNPWNY---SAVCVYSLGDI----DRVFRTSSLKGYH 353

  Fly   360 WLPVEREQVPKPRPGQCVEDSRTLTSIAVNFIKNHPLMEEAV--------PAVHGRPLLTKVNLH 416
            .      .:|.||||.|:...:.:.:.......:||.:.:.|        |..|.:....||.:|
Mouse   354 M------GLPNPRPGMCLPKKQPIPTETFQVADSHPEVAQRVEPMGPLKTPLFHSKYHYQKVVVH 412

  Fly   417 HRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPL-- 479
                      ::::.:|..:.|:|..||.|.:.|.:        .:.|:..:.|.:.|::.|.  
Mouse   413 ----------RMQASNGETFHVLYLTTDRGTIHKVV--------ESGDQDHSFVFNIMEIQPFHR 459

  Fly   480 GTPIRELVISTSKNSLVVVSDGSLVSVPLHHCS-HIVDCLGCLSLQDPICAWDLQTHECKNLATS 543
            ...|:.:.:...:..|.|.|...:..|||..|. :...|.|||..:||.|.||  ...|.::.:|
Mouse   460 AAAIQAISLDADRRKLYVTSQWEVSQVPLDMCEVYSGGCHGCLMSRDPYCGWD--QDRCVSIYSS 522

  Fly   544 QHKFGTKTYLQSLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTE 591
            |     ::.|||:|..:       ||  |:.|.          |.|.|
Mouse   523 Q-----RSVLQSINPAE-------PH--RECPN----------PKPDE 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 116/478 (24%)
PSI 510..>537 CDD:214655 10/27 (37%)
Sema7aNP_035482.1 Sema_7A 70..489 CDD:200504 118/486 (24%)
Cell attachment site. /evidence=ECO:0000255 265..267 0/1 (0%)
Interaction with integrins. /evidence=ECO:0000250 265..267 0/1 (0%)
PSI 491..540 CDD:396154 20/64 (31%)
Ig 547..617 CDD:472250 156/633 (25%)
Ig strand B 560..564 CDD:409353
Ig strand C 572..576 CDD:409353
Ig strand E 594..598 CDD:409353
Ig strand F 608..613 CDD:409353
Blue background indicates that the domain is not in the aligned region.

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