DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and Sema6c

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001258953.1 Gene:Sema6c / 20360 MGIID:1338032 Length:963 Species:Mus musculus


Alignment Length:732 Identity:236/732 - (32%)
Similarity:340/732 - (46%) Gaps:137/732 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 MILLITLSGLTIVAGWMP-DVKP----DLQTK---------QDKVLAHFIGNSTDYFKILDHNDE 69
            ::||:.||.|.......| |..|    |||..         :|..:|..:|  .|:.:.|..| .
Mouse    11 LLLLLLLSSLPQAQAAFPQDPTPLLTSDLQGASPSSWFRGLEDDAVAAELG--LDFQRFLTLN-R 72

  Fly    70 FVLVGAKDVIYNVSL------NGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLRVYALRP-N 127
            .:||.|:|.:::..|      .||.....|.|.|  .|.|.||::||...:|:||:||  |.| |
Mouse    73 TLLVAARDHVFSFDLQAQEEGEGLVPNKFLTWRS--QDMENCAVRGKLTDECYNYIRV--LVPWN 133

  Fly   128 GEVLL-CGTNSYKPRCRHY--TPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYA 189
            .:.|| |||||:.|.||.|  |.::...||                 :..|..||:....::...
Mouse   134 SQTLLACGTNSFSPMCRSYGITSLQQEGEE-----------------LSGQARCPFDATQSTVAI 181

  Fly   190 FADGHLYSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAIERNGYVLFFFRELSM 249
            ||:|.|||||.|||...|.::||.     .||:.:||.|.|.:|.||.|:|...:|.|||||:|:
Mouse   182 FAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVYALEHGEHVYFFFREVSV 246

  Fly   250 EVMNFGKAVYSRVARVCKNDRGG-PYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQAISPIVESG 313
            |....|:..:||||||||.|.|| |.:..:.||||||.||||||||:..||||.:|:::..|...
Mouse   247 EDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNLH 311

  Fly   314 SKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPGQCV- 377
            .:|.::.||||..|:|||||||||.:|||...|:|:||.|:.....|.||..::||.||||.|. 
Mouse   312 GRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDKVPSPRPGSCAG 376

  Fly   378 -------EDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQ--VKSLSG 433
                   ..|:.|....:.|||.|||::.|||....:||||       ||:.|:..|  |..::|
Mouse   377 VGAAASFSSSQDLPDDVLLFIKAHPLLDPAVPPATHQPLLT-------LTSRALLTQVAVDGMAG 434

  Fly   434 AYYD--VIYSGTDDGKVTKFI----NILSTHPNSTVDRLKTVVISEMQVLP-----------LGT 481
            .:.:  |::.|::||.|.|.:    ..|.:.|         :|:.|:....           ...
Mouse   435 PHRNTTVLFLGSNDGTVLKVLPPGGQSLGSEP---------IVLEEIDAYSHARCSGKRSPRAAR 490

  Fly   482 PIRELVISTSKNSLVVVSDGSLVSVPLHHCSHIVDC-LGCLSLQDPICAWDLQTHECKNLATSQH 545
            .|..|.:.|..:.|.|...|.:|.:.|..|:....| ..||:..||.|.|    |..:...:.:.
Mouse   491 RIIGLELDTEGHRLFVAFPGCIVYLSLSRCARHGACQRSCLASLDPYCGW----HRSRGCMSIRG 551

  Fly   546 KFGTKTYLQ-SLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQGNQPS 609
            ..||...|. :..||:...........:..||..  ::|.:.|.|:.|.....|:  :.||.|.|
Mouse   552 PGGTDVDLTGNQESTEHGDCQDGATGSQSGPGDS--AYVLLGPGPSPETPSSPSD--AQQGPQSS 612

  Fly   610 LEQQPTGGDDFGLNKITLTSMDPDDIMPNLNDPQKSTASVDEIKYASTPSFMLLTTIVFFTFLVG 674
                ..|....|:.:         |:.|       ::||      .|.|..:||..:.....|..
Mouse   613 ----TLGAHTQGVRR---------DLSP-------ASAS------RSIPIPLLLACVAAAFALGA 651

  Fly   675 GIAGI----CCVKAKSR 687
            .::|:    .|.:|..|
Mouse   652 SVSGLLVSCACRRANRR 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 183/498 (37%)
PSI 510..>537 CDD:214655 9/27 (33%)
Sema6cNP_001258953.1 Sema 54..518 CDD:387663 183/503 (36%)
PSI 519..>540 CDD:214655 7/20 (35%)
PHA03247 <714..956 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 317 1.000 Domainoid score I1262
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 370 1.000 Inparanoid score I2107
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8703
orthoMCL 1 0.900 - - OOG6_101616
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X415
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.860

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