DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and smp-1

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_001379344.1 Gene:smp-1 / 173351 WormBaseID:WBGene00004889 Length:714 Species:Caenorhabditis elegans


Alignment Length:671 Identity:230/671 - (34%)
Similarity:343/671 - (51%) Gaps:101/671 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 IGNS---TDYFKILDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGKHEWDC 115
            ||.|   :|:||:|..:.:.:||||::.:||:||:.|....:::|.......|.|.:|||.:.||
 Worm    45 IGTSSDESDHFKLLAADGDSLLVGARNAVYNLSLSTLSVNHKIDWKPPAEHIEECIMKGKSKTDC 109

  Fly   116 HNYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPY 180
            .||:||.|.:..|..|:|||:::.|:||.||..|.....              :|..:.||:.||
 Worm   110 QNYIRVLARKSAGVSLVCGTHAFSPKCREYTVTEFGIRN--------------TRQFDGQGISPY 160

  Fly   181 SPAHNSTYAFADG--HLYSATVADFSGGDPLIYRE------------NLRTEQYDLKQLNQPDFV 231
            .|.|||:..:..|  .|:.|||.||.|.|.||||:            |:||:.||.:.||.|:||
 Worm   161 DPKHNSSALYVPGTNQLFVATVTDFVGNDALIYRKTIDETPSSKSAANIRTQSYDARVLNAPNFV 225

  Fly   232 GAIERNGYVLFFFRELSMEVM--NFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVP- 293
            .......:|.|:|||::.|.:  |....:|:|||||||||:||.....:.|||:||||||||:| 
 Worm   226 ATFAYKEHVYFWFREIASEAIDNNEEPQIYARVARVCKNDKGGARPANERWTSYLKARLNCSLPS 290

  Fly   294 GEFPFYFDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFD-GEFKSQKDS 356
            |..||||:|::|:|..:::|:.: ::|.||:|..:.:..||||.|::..|...|| |.||.|.::
 Worm   291 GSSPFYFNELKAVSDPIDAGNNNHVVYTVFSTPDSDVRMSAVCKFSMKKIREEFDNGTFKHQNNA 355

  Fly   357 QSHWLPVEREQVPKPRPGQCVEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTA 421
            ||.|:...|.:|||||||.|..||..|....|:||.:|||:...:|:| ..|||.:......||.
 Worm   356 QSMWMAFNRNEVPKPRPGSCSPDSTKLPENTVSFILHHPLLHRPIPSV-AAPLLVEGADRADLTQ 419

  Fly   422 IAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIREL 486
            |.|.|:|:::.|..||:::.||.||||.|.:.:   ..|:|       ||....|...|.||..|
 Worm   420 ITVLPRVRAVGGHNYDILFIGTSDGKVLKVVEV---DGNAT-------VIQSATVFQRGVPIVNL 474

  Fly   487 VISTSKNSLVVVSDGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKT 551
            :  |:|.|:|:||...:.|:|:|:|:....|..|:.||||.||||.....|.:       .|:.|
 Worm   475 L--TTKESVVIVSADEIASLPVHNCAQQTSCSKCVQLQDPHCAWDSSIARCVH-------GGSWT 530

  Fly   552 YLQSLNSTKKAAALLCPH--IPRDA---------PGA----------ETVSFVTMAPPPTEEQKL 595
            ..|.:.:.....:..||.  |.|:.         |.|          .|::.|.:|...:    |
 Worm   531 GDQFIQNMVFGQSEQCPEGIIVREVFDDNESEAQPEAVSRSGYPKEHSTITVVLVAAVAS----L 591

  Fly   596 LYSNVGS-----------SQGNQPSLEQQPTGG---DDFGLNKIT----LTSMDPDD--IMPNLN 640
            :...:|:           :..::|......|.|   |.||..::|    ||:....|  .:|...
 Worm   592 ISLIIGAFLQIGIRVNRWAATSEPHRSASSTSGSDYDSFGRARLTRHDSLTTATKVDHGFVPQSK 656

  Fly   641 DPQKSTASVDEIKYASTPSFM 661
            ....:|:.|..|.....|..|
 Worm   657 QSVDATSLVMSINATHHPMSM 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 187/477 (39%)
PSI 510..>537 CDD:214655 11/26 (42%)
smp-1NP_001379344.1 Sema_1A 49..497 CDD:200498 185/474 (39%)
PSI 496..547 CDD:214655 15/57 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 324 1.000 Domainoid score I645
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28691
OrthoDB 1 1.010 - - D231201at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14671
orthoMCL 1 0.900 - - OOG6_101616
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X415
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.930

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