DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and mab-20

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_490875.1 Gene:mab-20 / 171727 WormBaseID:WBGene00003111 Length:658 Species:Caenorhabditis elegans


Alignment Length:521 Identity:143/521 - (27%)
Similarity:237/521 - (45%) Gaps:73/521 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 ILDHNDEFVLVGAKDVI-----YNVSLNGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLRVY 122
            ::|.....:.||::..|     ||::..|....|:.:...::::...|......|..|....|..
 Worm    40 LIDPKAGALFVGSEGAIFRLWAYNINDTGENVFAKKQLVLSESEESECRSTASDERLCRPSTRFL 104

  Fly   123 ALRPN-GEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNS 186
            |...| ..:.:|.:...:|..|....:.:..::        ..|.|:       |:|...|..|.
 Worm   105 AFTNNLDSIYVCSSVGMRPEIRVLDSLSLRDQQ--------EPRTEI-------GICVVDPTFNF 154

  Fly   187 TYAFADG-------HLYSATVADFSGGDPLIYR-----------ENLRTEQYDLKQLNQPDFVGA 233
            |....|.       .:||.......|.:.||||           .::||...|.|.||:|.|||:
 Worm   155 TAVVVDSGNPEDATSVYSGIRTGMGGENHLIYRPPLTKNGKQLHASIRTIYSDNKWLNEPQFVGS 219

  Fly   234 IERNGYVLFFFRELSMEVMNFG-KAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFP 297
            .:...:|.|||||::.: .:|| :.|:||||||||.|.||.....:.||||:||||||||...||
 Worm   220 FDVGQHVFFFFREIAHD-NSFGERIVHSRVARVCKKDIGGRNVLRQVWTSFVKARLNCSVSANFP 283

  Fly   298 FYFDEIQAISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLP 362
            ||||.||::..:.:.| ::..||.|:||..|...||:|.|.:..|....|.....::.:...: .
 Worm   284 FYFDHIQSVKRVDKHG-ETYFYATFSTSETAFTSSAICMFQLSSINHLLDTGLLMEETANGQF-S 346

  Fly   363 VEREQVPKPRPGQCVEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQ 427
            |..:::|..|||.|.::|.:::...::|.|.|.|:.:::..  |.|:|...:  |..|.|.| .|
 Worm   347 VTADEIPAHRPGTCSQNSHSISDTDLHFAKTHLLVSDSISG--GTPILPLRD--HVFTHIVV-DQ 406

  Fly   428 VKSLSGAYYDVIYS-GTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTS 491
            :.:     .:||:: .:.:.:|.|.     :|.... :..|:.:|.|..:....:.|.::.:..:
 Worm   407 LPN-----QNVIFAFDSANRRVWKI-----SHWKEG-NEWKSNLIEEKSLKIAASRINDVALLPA 460

  Fly   492 KNSLVVVSDGSLVS-VPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYLQS 555
            :  ...|:.|:.|| ..:..||....|..| || ||.|:|        |...|:....|||..:|
 Worm   461 E--FFFVTSGAGVSQFSVARCSEQPSCALC-SL-DPYCSW--------NAVNSKCSLKTKTNEKS 513

  Fly   556 L 556
            :
 Worm   514 V 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 127/474 (27%)
PSI 510..>537 CDD:214655 10/26 (38%)
mab-20NP_490875.1 Sema_2A 34..477 CDD:200499 127/472 (27%)
PSI 478..521 CDD:279745 16/47 (34%)
IGc2 <556..596 CDD:197706
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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