DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and SEMA3A

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:NP_006071.1 Gene:SEMA3A / 10371 HGNCID:10723 Length:771 Species:Homo sapiens


Alignment Length:692 Identity:198/692 - (28%)
Similarity:305/692 - (44%) Gaps:130/692 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 IGNSTDYFK-ILDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGKHEW-DCH 116
            :.||:.|.. :||.....:.|||||.|::..|..:|:..::.|..:...|:.|...||... :|.
Human    51 LANSSSYHTFLLDEERSRLYVGAKDHIFSFDLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECA 115

  Fly   117 NYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYS 181
            |:::|........:..|||.::.|.|.:.        |.|.....:..:.|.|.....:|..||.
Human   116 NFIKVLKAYNQTHLYACGTGAFHPICTYI--------EIGHHPEDNIFKLENSHFENGRGKSPYD 172

  Fly   182 PAHNSTYAFADGHLYSATVADFSGGDPLIYR-----ENLRTEQYDLKQLNQPDFVGA-------I 234
            |...:.....||.|||.|.|||.|.|..|:|     ..:||||:|.:.||.|.|:.|       .
Human   173 PKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPKFISAHLISESDN 237

  Fly   235 ERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE--FP 297
            ..:..|.|||||.:::..:.|||.::|:.::||||.||..|....||:||||||.|||||.  ..
Human   238 PEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGID 302

  Fly   298 FYFDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWL 361
            .:|||:|.:..:.....|: ::|.|||||.|...|||||.:::.|:...|.|.:..:......|:
Human   303 THFDELQDVFLMNFKDPKNPVVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWV 367

  Fly   362 PVEREQVPKPRPGQC-------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRL 419
            |.: .:||.||||.|       .:.::.|....:.|.::||.|...|..::.||::.|.:::::.
Human   368 PYQ-GRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPMNNRPIVIKTDVNYQF 431

  Fly   420 TAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIR 484
            |.|.| .:|.:..| .|||::.|||.|.|.|.::|    |..|...|:.|::.||.|....|.|.
Human   432 TQIVV-DRVDAEDG-QYDVMFIGTDVGTVLKVVSI----PKETWYDLEEVLLEEMTVFREPTAIS 490

  Fly   485 ELVISTSKNSLVVVSDGSLVSVPLHHCS-HIVDCLGCLSLQDPICAWDLQ--------------- 533
            .:.:||.:..|.:.|...:..:|||.|. :...|..|...:||.||||..               
Human   491 AMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSACSRYFPTAKRRTRR 555

  Fly   534 ---------THECKNLATSQHK---------FG---TKTYL---------------QSLNSTKKA 562
                     || |.:|....|.         :|   :.|:|               |..|..:|.
Human   556 QDIRNGDPLTH-CSDLHHDNHHGHSPEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNEERKE 619

  Fly   563 AALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQGNQPSLEQQPTG---------GD 618
            ...:..||.|                 |::..||           .||:|:.:|         |.
Human   620 EIRVDDHIIR-----------------TDQGLLL-----------RSLQQKDSGNYLCHAVEHGF 656

  Fly   619 DFGLNKITLTSMDPDDIMPNLN-DPQKSTASVDEIKYASTPS 659
            ...|.|:||..:|.:.:...|: |.....:...|:..:.|||
Human   657 IQTLLKVTLEVIDTEHLEELLHKDDDGDGSKTKEMSNSMTPS 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 156/479 (33%)
PSI 510..>537 CDD:214655 11/51 (22%)
SEMA3ANP_006071.1 Sema_3A 26..518 CDD:200510 156/481 (32%)
PSI 516..>552 CDD:214655 9/35 (26%)
Ig_Sema3 579..670 CDD:409455 21/118 (18%)
Ig strand A 579..585 CDD:409455 0/5 (0%)
Ig strand B 590..598 CDD:409455 2/7 (29%)
Ig strand C 604..610 CDD:409455 0/5 (0%)
Ig strand C' 612..615 CDD:409455 0/2 (0%)
Ig strand D 625..629 CDD:409455 2/3 (67%)
Ig strand E 632..639 CDD:409455 2/17 (12%)
Ig strand F 645..654 CDD:409455 1/8 (13%)
Ig strand G 657..670 CDD:409455 4/12 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 728..771
Blue background indicates that the domain is not in the aligned region.

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