DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema5b

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_031748739.1 Gene:sema5b / 100493363 XenbaseID:XB-GENE-959729 Length:1104 Species:Xenopus tropicalis


Alignment Length:540 Identity:200/540 - (37%)
Similarity:286/540 - (52%) Gaps:70/540 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 LAHFIGNST-----DYFKI-LDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALK 108
            |..::.|.|     |:.:: ||.|...::|||::.::.:||:.:..|...||.|.:..:..|..|
 Frog    61 LKPWLSNFTFSDVRDFSQLALDLNRNQLIVGARNYLFRLSLHNVSLIQAAEWSSDEDTQRSCQSK 125

  Fly   109 GKHEWDCHNYLRVYALRPNGE-VLLCGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDV 172
            ||.|.:|.||:||  |..:|: |..||||::.|.|        :|.:.|:..       :|...:
 Frog   126 GKTEDECQNYVRV--LIVSGKRVFTCGTNAFSPVC--------TSRQVGNLS-------KVIEKI 173

  Fly   173 EAQGLCPYSPAHNSTYAFAD-GHLYSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFV 231
            .....|||.|.||||..... |.||:|||.||||.||:|||.     .|||.||:.|.||:|:||
 Frog   174 NGVARCPYDPRHNSTAVMTTRGELYAATVIDFSGRDPVIYRSLGSVPPLRTAQYNSKWLNEPNFV 238

  Fly   232 GAIERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEF 296
            .|.:...:..|||||.::| .:.||.||||||||||||.||.:....:||:|:|||||||.|||.
 Frog   239 AAYDIGIFTYFFFRENAVE-HDCGKTVYSRVARVCKNDYGGRFLLEDTWTTFMKARLNCSRPGEI 302

  Fly   297 PFYFDEIQAISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWL 361
            |||::|:|:...:.|   :.|||.||||:||:|..|||||||:..|..||:|.|:.|::.:|.||
 Frog   303 PFYYNELQSTFLLPE---QDLIYGVFTTNVNSIAASAVCAFNLSAITQAFNGPFRYQENPRSAWL 364

  Fly   362 PVEREQVPKPRPGQCVEDS--RTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAV 424
            |. ...:|..:.|...:||  ..||..::...:...||.:.|..|...||:|:.::  |.:.:.|
 Frog   365 PT-INPIPNFQCGILNDDSPNENLTERSLQDAQRLFLMNDVVQPVSVEPLVTQDSV--RFSKLVV 426

  Fly   425 HPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDR-LKTVVISEMQVLPLG--TPIREL 486
              .:.......|.|:|.||:.|.:.|.:        ||.:| |::..:.||.:||:|  .|||.|
 Frog   427 --DIVQGKDTLYHVMYIGTEHGTILKAL--------STANRSLRSCYLEEMHILPIGQQEPIRSL 481

  Fly   487 VISTSKNSLVVVSDGSLVSVPLHHCSHI---VDCLGCLSLQDPICAWDLQTHECKNLATSQHKFG 548
            .|..|..||.|..:..::.|||..||..   .|.||.   :||.|.||.:...|.. |...:..|
 Frog   482 QILHSNRSLFVGLNNGVLKVPLERCSIYRTEGDRLGA---RDPYCGWDSKKKRCTPXAYPHYITG 543

  Fly   549 TKTYLQSLNSTKKAAALLCP 568
            .:.            .|.||
 Frog   544 PRN------------TLSCP 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 183/473 (39%)
PSI 510..>537 CDD:214655 10/29 (34%)
sema5bXP_031748739.1 Sema_5B 68..504 CDD:200525 181/469 (39%)
PSI 505..>533 CDD:214655 10/30 (33%)
TSP1 613..674 CDD:214559
TSP1 679..725 CDD:214559
TSP1 810..862 CDD:214559
TSP1 867..919 CDD:214559
TSP1 922..963 CDD:214559
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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