DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema3d

DIOPT Version :10

Sequence 1:NP_611244.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_002935293.5 Gene:sema3d / 100492784 XenbaseID:XB-GENE-490694 Length:776 Species:Xenopus tropicalis


Alignment Length:573 Identity:173/573 - (30%)
Similarity:278/573 - (48%) Gaps:79/573 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RPSSAAMLVNAIPMILLITLSGLTIVAGWMPDVKPDLQTKQDKVLAH----FIGNSTDYFK---- 62
            :|..::.:::   |:||:.|.....:...:|.:|   .:.:|.:|::    |:...|:..:    
 Frog    14 KPQHSSTMLS---MVLLMFLPATDSLKQNIPRLK---LSYKDLLLSNSCVPFLHPLTEGLEFQTL 72

  Fly    63 ILDHNDEFVLVGAKDVIYNVSLNGL-KEIARLEWHSTDADRELCALKGK-HEWDCHNYLRVYALR 125
            :||.....:|:||||.||.:.|..| |.:.::.|.:.....|.|...|| :..:|.|:::|....
 Frog    73 LLDEERGKLLLGAKDHIYLLDLVDLNKNLRKIHWPAAKEKIEFCKRAGKDNNLECANFIKVLHHY 137

  Fly   126 PNGEVLLCGTNSYKPRCRHY---TPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGL------CPYS 181
            .......|||.::.|.|.:.   ||.|                 ||...::.|.|      ||:.
 Frog   138 NKTHAYTCGTGAFHPLCGYVELGTPKE-----------------EVVFQLDTQNLESGRLKCPFD 185

  Fly   182 PAHNSTYAFADGHLYSATVADFSGGDPLIYREN--------LRTEQYDLKQLNQPDFVGAI---- 234
            |.........|.:|::.|.:||.|.:....|..        ::|:..|...||...|.||.    
 Frog   186 PQPPFASIMTDEYLFAGTASDFLGKETTFTRSMGPPPDHHFIKTDTDDHYWLNGAKFFGAYAIPD 250

  Fly   235 ---ERNGYVLFFFRELSMEVMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGE- 295
               ..:..:.|||||.|.|.....|:|:|||.||||||.||..|....||:||||||.||:|.: 
 Frog   251 TYNPDDDKIYFFFRESSPEGSFSEKSVFSRVGRVCKNDIGGQRSLINKWTTFLKARLVCSIPAQD 315

  Fly   296 -FPFYFDEIQAISPIVESGSKS-LIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQS 358
             ...||||:|.|..:.....:: ::|.:|||:.:....||||.:::.||.|.|:|.: :.|:|..
 Frog   316 GGDTYFDELQDIFLLPTKDERNPVVYGIFTTTSSIFKASAVCVYSMADIRAVFNGPY-AHKESPD 379

  Fly   359 H-WLPVEREQVPKPRPGQC--------VEDSRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVN 414
            | |:..: .::|.||||.|        :..::......:||:||||||.:||..:||:|:.|::|
 Frog   380 HRWVQYD-GRIPYPRPGTCPSKTYDPTIRSTKDFPDDVINFVKNHPLMYKAVYPLHGKPVFTRLN 443

  Fly   415 LHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPL 479
            :.::||.|||...|  .....|||::.|||.|.|.|.|.:     ...:..::.|::.|||:...
 Frog   444 VDYKLTQIAVDHVV--AEDGQYDVMFLGTDIGTVLKVITV-----TKDIWNMEEVLLEEMQIFKQ 501

  Fly   480 GTPIRELVISTSKNSLVVVSDGSLVSVPLHHC-SHIVDCLGCLSLQDPICAWD 531
            ...|..:.:|..:..|.:.|:..||.:.||.| ::...|..|...:||.||||
 Frog   502 PAAITNIELSLKQQQLYITSEVGLVQLSLHRCDTYGKACTDCCLARDPYCAWD 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_611244.1 Sema_1A 55..511 CDD:200498 154/497 (31%)
PSI 510..>537 CDD:214655 9/23 (39%)
sema3dXP_002935293.5 Sema_3D 60..533 CDD:200513 154/498 (31%)
PSI 532..569 CDD:214655 9/23 (39%)
Ig_Sema3 594..685 CDD:409455
Ig strand A 594..600 CDD:409455
Ig strand B 605..613 CDD:409455
Ig strand C 619..625 CDD:409455
Ig strand C' 627..630 CDD:409455
Ig strand D 640..644 CDD:409455
Ig strand E 647..654 CDD:409455
Ig strand F 660..669 CDD:409455
Ig strand G 672..685 CDD:409455
Blue background indicates that the domain is not in the aligned region.

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