DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sema1b and sema4g

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_002938767.1 Gene:sema4g / 100038182 XenbaseID:XB-GENE-856594 Length:830 Species:Xenopus tropicalis


Alignment Length:818 Identity:211/818 - (25%)
Similarity:349/818 - (42%) Gaps:169/818 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 MILLITLSGLTIVAGWMP--------DVKPDLQTKQDKV--LAHFIGNSTDYFKILDHNDEFVL- 72
            :::|.|:|    |.|:..        |..|.:....:::  |..|....::|..:|..::..:| 
 Frog     9 LVVLCTVS----VIGYYSTDGSPMGLDATPRITVTYNEILDLRRFSSRVSNYSTLLLEDERGILY 69

  Fly    73 VGAKDVIYNVSLNGLKEIAR--LEWHSTDADRELCALKGK-HEWDCHNYLRVYALRPNGEVLLCG 134
            |||:..|::::...:.:..:  :.|..|....:.|..||| ::.:|.|::|:........:.:||
 Frog    70 VGARGAIFSLNSTNISQRYQKAIPWEVTAQKHDECIKKGKNNQTECFNHIRLLLRFNETHLYVCG 134

  Fly   135 TNSYKPRC-----RHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGH 194
            |.::.|.|     |.:.   :|||..                 |.:..|||.||........||.
 Frog   135 TYAFSPLCSFIDSRTFV---LSSETE-----------------EGKEKCPYDPAKGYVGLLVDGG 179

  Fly   195 LYSATVADFSGGDPL---IYRENLRTEQYDLKQLNQPDFVGA----------IERNGYVLFFFRE 246
            ||:|::.:|.....:   :.:.:|:||:.:|..||.|:||.|          :..:..:.:||.|
 Frog   180 LYTASLYEFRNLPDIRRNLLQRSLKTEESNLHWLNDPEFVSAALVQESMNVEVGDDDKIYYFFNE 244

  Fly   247 LSMEVMN-FGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQAISPIV 310
            ..:|..: |..:..:.||||||:|.||.....|.|||||||||.|.:    |||  |:...:..:
 Frog   245 KVVEENSAFLGSKTASVARVCKDDMGGKKILQKKWTSFLKARLVCYM----PFY--EVLKSAYTL 303

  Fly   311 ESGS--KSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRP 373
            |.||  .::.|..|......:..||:|.:::.||...|:|.:...:.|...|...|.| ||.|||
 Frog   304 ELGSWDTTIFYGAFILQWKNMEESAICRYSISDIQKVFEGPYMEYQYSSRKWSRYEGE-VPSPRP 367

  Fly   374 GQCVED---------SRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVK 429
            |.|:.:         |:.|.:..::|:|.||||.|.|..|..:|||.|.|:.:  |.||| .:||
 Frog   368 GSCITNEFRMNGFNTSQDLPNNVLDFVKLHPLMYEKVRPVGEQPLLVKKNIIY--TRIAV-DRVK 429

  Fly   430 SLSGAYYDVIYSGTDDGKVTKFINILS-THPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKN 493
            :|:..||||::.|||||.:.|.:.|.| .|           :|.|:||.....|:..||||..:|
 Frog   430 ALNDEYYDVLFLGTDDGWIHKAVVIGSMVH-----------IIEEIQVYKFPQPVENLVISKKQN 483

  Fly   494 SLVVVSDGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYLQS--- 555
            :|.:.:...::.:||..||....|..|:..::|.||||  .|.|:::..::::......:|:   
 Frog   484 ALYIGAQSGVLQIPLFGCSQYTSCYDCILARNPYCAWD--GHACRDIIGAKNRTQMTQDMQNGNG 546

  Fly   556 --LNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNVGSSQ----GNQPSLEQQP 614
              ||||...|  |...:.|...|.:.:.           |..|.||:...|    |.....:.: 
 Frog   547 GCLNSTDDGA--LKKRVRRVLKGNDVLL-----------QCELRSNLARPQWYVNGTDKLYDSE- 597

  Fly   615 TGGDDFGLNKITLTSMDPD-----DIMPNLNDPQKSTA--------SVDEIKYASTPS------- 659
             |....|::.:.:|...|:     ......|..|...|        .:.:.|..|||:       
 Frog   598 -GHTRLGVDGLLITDTLPEHSGEYSCYSEENGLQSLVAVYSLNVLLELPKEKNYSTPTPIIQLPT 661

  Fly   660 ----------FMLLTTIVFFTFLVGGIAGICCVKAKSRLMEAQMDESHRNHFG------------ 702
                      |:.::||.        |.|:.||.....|:.....:..:..:.            
 Frog   662 AAPQSTGNIQFIYISTIT--------ILGVLCVVLSIVLLYVSCQQKKKGKYAVRNSRSTNVELQ 718

  Fly   703 -KPMQFKHQNTGKDINLLMGSNAYTTTQKTPNLDLEKD 739
             ...|||.:  .:|:|............:.|.|...||
 Frog   719 TVSSQFKEK--AEDLNSYSDGCLQIIPGEAPTLSPHKD 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 148/490 (30%)
PSI 510..>537 CDD:214655 10/26 (38%)
sema4gXP_002938767.1 Sema 47..499 CDD:417757 148/492 (30%)
PSI 500..>527 CDD:214655 11/28 (39%)
Ig_Sema4B_like 557..643 CDD:409456 16/98 (16%)
Ig strand B 570..574 CDD:409456 0/14 (0%)
Ig strand C 582..586 CDD:409456 1/3 (33%)
Ig strand E 605..609 CDD:409456 0/3 (0%)
Ig strand F 619..624 CDD:409456 0/4 (0%)
Ig strand G 636..639 CDD:409456 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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