DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sema1b and sema4d

DIOPT Version :9

Sequence 1:NP_001163178.1 Gene:Sema1b / 37007 FlyBaseID:FBgn0016059 Length:770 Species:Drosophila melanogaster
Sequence 2:XP_012814281.1 Gene:sema4d / 100038178 XenbaseID:XB-GENE-492763 Length:852 Species:Xenopus tropicalis


Alignment Length:589 Identity:180/589 - (30%)
Similarity:287/589 - (48%) Gaps:78/589 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 NAIPMILLITLSGLTIVAGWMPDVKPDLQTKQDKVLAHFIGNSTDYFKILDHNDEFVL-VGAKDV 78
            ||:.::|.....    .|.:.|..:.....|:..::...:...::|..:|...::.|| |||::.
 Frog     8 NALYLVLCTAFG----AAEFGPAPRITWHLKETNLMHFHVSGISNYSTLLLSEEKDVLYVGAREA 68

  Fly    79 IYNV-SLNGLKEIARLEWHSTDADRELCALKGK-HEWDCHNYLRVYALRP-NGEVL-LCGTNSYK 139
            |:.| |||..:::....|..:|.....||.||| .:.:|.||:||  ::| |.:.| :||||:::
 Frog    69 IFAVSSLNVAEKLHEAYWKVSDEKNNECAWKGKSKQTECLNYIRV--IQPLNDKTLYVCGTNAFQ 131

  Fly   140 PRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATVADFS 204
            |.|.:....:...               :.|:.:.:|.||:.||.:......||.|||.|..:|.
 Frog   132 PTCDYLNLTDFRL---------------LGRNEDGKGRCPFDPAQSYISVMVDGELYSGTSFNFL 181

  Fly   205 GGDPLIYREN----LRTEQYDLKQLNQPDFVGA-IER---------NGYVLFFFRELSMEVMNFG 255
            |.:|:|:|.:    |||| |.:..||:|.||.| :.|         :..|.|||.|:|:|...|.
 Frog   182 GSEPIIFRHSSQSQLRTE-YAVPWLNEPSFVYADVIRAPANNPEGDDDKVYFFFTEVSVEYEFFS 245

  Fly   256 KAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQAISPIVES-GSKSLIY 319
            |.:..|||||||.|:||..:..|.|||||||:|.|. ..|....|:.:..:..:..| .|:..||
 Frog   246 KLLIPRVARVCKGDQGGLRTLQKKWTSFLKAKLICH-SSENNLIFNVVSDVFILKHSDSSEPKIY 309

  Fly   320 AVFTTSVNAIPGSAVCAFNVDDILAAF-DGEF---KSQKDSQSHWLPVEREQVPKPRPGQCVED- 379
            .|||:.:|.:..|||||:||..:...| .|::   .:.:.|.:.|:....| |||||||.|:.: 
 Frog   310 GVFTSHLNNVGLSAVCAYNVSTVEEVFAKGKYMHSATVEQSNTKWVRYNGE-VPKPRPGACINNE 373

  Fly   380 --------SRTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYY 436
                    |..|..:.:.|:|:||||:::|..|..:|.|...::.:  |.|.| .:||:|.|..|
 Frog   374 ARAMNYTSSLNLPDMTLQFVKDHPLMDDSVSPVGNKPKLVLRDVIY--TQIVV-DRVKALDGNSY 435

  Fly   437 DVIYSGTDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVIST--SKNSLVVVS 499
            |:::..||.|.:.|.::          ...:..:|.|:.:.|...|::.|::|.  .|..:...|
 Frog   436 DIMFLSTDKGILHKAVS----------QDAEMRIIEEIVLFPHLQPVQTLLLSNKEGKRFIYAGS 490

  Fly   500 DGSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTKTYLQSLNSTKKAAA 564
            :..:|..||..|.....|..|:..:||.|||......|.|:.  |......:.:|.||..    |
 Frog   491 NTGVVQSPLAFCEKFTSCKDCILTRDPYCAWHPVKRSCVNIL--QDSTADGSLIQKLNGD----A 549

  Fly   565 LLCP 568
            ..||
 Frog   550 SQCP 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sema1bNP_001163178.1 Sema_1A 55..511 CDD:200498 157/490 (32%)
PSI 510..>537 CDD:214655 8/26 (31%)
sema4dXP_012814281.1 Sema_4D 30..500 CDD:200520 157/502 (31%)
PSI 502..>529 CDD:214655 8/26 (31%)
Ig 561..645 CDD:386229
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.