Protein Alignment Sema1b and sema5bb

DIOPT Version :10

• Sequence 1: NP_611244.1
• Gene: Sema1b / 37007
• FlyBaseID: FBgn0016059
• Length: 770
• Species: Drosophila melanogaster
• Sequence 2: XP_001340298.6
• Gene: sema5bb / 100000009
• ZFINID: ZDB-GENE-130530-778
• Length: 1098
• Species: Danio rerio
• Alignment Length: 560
• Identity: 191/560 - (34%)
• Similarity: 277/560 - (49%)
• Gaps: 71/560 - (12%)

  Fly    20 ILLITLSGLTIVAGWMPDVKPDLQTKQDKVLAHFIGNSTDY---------FKI----------LD 65
            :::..|..|.:|....|...||....|.:.....:...|.|         |.:          ||
Zfish    16 LVIFHLLFLPVVTSQTPSSPPDTPDPQPEECRRKMHPVTSYTALSPWLFSFSVPGVNYYSPLTLD 80

  Fly    66 HNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDADRELCALKGKHEWDCHNYLRVYALRPNGEV 130
            .:...::|||::.::.:||:.:..:...||...:..|..|..|||.|.:|.||:||..|  ||..
Zfish    81 LSRSQLIVGARNHLFRLSLSNISLLQATEWGVDETTRRSCQSKGKTEDECQNYVRVLLL--NGSR 143

  Fly   131 LL-CGTNSYKPRCRHYTPVEVSSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFAD-G 193
            |. ||||::.|.|......::||               |...:.....|||.|.||||....: |
Zfish   144 LFTCGTNAFMPVCVTRPVTDISS---------------VLDSISGVARCPYDPRHNSTAMITESG 193

  Fly   194 HLYSATVADFSGGDPLIYRE-----NLRTEQYDLKQLNQPDFVGAIERNGYVLFFFRELSMEVMN 253
            .:|:|||.|||..||:|||.     .|||.||:.|.||.|.|:.|.|.:.:...|.||.::| .:
Zfish   194 EVYAATVTDFSSRDPIIYRSLGNMPPLRTAQYNSKWLNDPHFISAYEVSRFTYVFLRENAVE-QD 257

  Fly   254 FGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYFDEIQAISPIVESGSKSLI 318
            .||.|:|||||:|:||.||.:....:||:|:|||||||..|:.|||:.|:|:...:.|   :.||
Zfish   258 CGKTVFSRVARMCQNDIGGRFLLEDTWTTFMKARLNCSRSGDVPFYYHELQSTFYLPE---QDLI 319

  Fly   319 YAVFTTSVNAIPGSAVCAFNVDDILAAFDGEFKSQKDSQSHWLPVEREQVPKPRPG-QC--VEDS 380
            |.||||:||:|..|||||||:..|..||:|.|:.|::.::.||     ..|.|.|. ||  |.||
Zfish   320 YGVFTTNVNSIAASAVCAFNLSAITQAFNGPFRYQENPRTSWL-----STPNPIPNFQCGTVNDS 379

  Fly   381 ---RTLTSIAVNFIKNHPLMEEAVPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDVIYSG 442
               ..||..::...:...||.:.|..:...||:.:.|:  |.:.:||  .:.......|.|:|.|
Zfish   380 GPGANLTERSLQDAQRLFLMSDVVQPISTDPLVMQDNI--RFSKLAV--DIVQGRDTLYHVMYIG 440

  Fly   443 TDDGKVTKFINILSTHPNSTVDRLKTVVISEMQVLPLGT--PIRELVISTSKNSLVVVSDGSLVS 505
            |:.|.:   |..|||:..|    |:...:.||.:||..|  .|..|.|..|..||.|.....::.
Zfish   441 TEYGTI---IKALSTNNKS----LRGCYLEEMNILPGNTQEAILNLQILHSDRSLFVGLPSRVLK 498

  Fly   506 VPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQH 545
            :||..||:.:....||..:||.|.||.:...|..:..|.:
Zfish   499 IPLERCSNYITEQDCLGARDPYCGWDRKEKRCTTIEDSSN 538

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sema1b	NP_611244.1	Sema_1A	55..511	CDD:200498	173/489 (35%)
		PSI	510..>537	CDD:214655	9/26 (35%)
sema5bb	XP_001340298.6	None