DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eIF3c and eif3c

DIOPT Version :9

Sequence 1:NP_001286545.1 Gene:eIF3c / 37005 FlyBaseID:FBgn0034258 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_989413.1 Gene:eif3c / 395052 XenbaseID:XB-GENE-5720067 Length:922 Species:Xenopus tropicalis


Alignment Length:946 Identity:485/946 - (51%)
Similarity:648/946 - (68%) Gaps:72/946 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSRFFANGSESESES--SEEEI----QATNFNKASAFQFSDDEEEVKRVVRSTKEKRYENLTSII 59
            ||||||.||:|||||  |.:||    ....|.|.... .|||||:.||||||.|:||:|.||::|
 Frog     1 MSRFFATGSDSESESSLSGDEILPKPVGGTFGKQPII-LSDDEEDTKRVVRSAKDKRFEELTNLI 64

  Fly    60 KTIRNHKKIKDIPNTLSSFEDLTRAYQKALPVISKEENGITPRFYIRCLAELEDFINEVWEDREG 124
            |||||..||:|:...|..||.|.:|:.||..::.||  |: ||||||.|::|||::||:|||:||
 Frog    65 KTIRNAMKIRDMTKCLEEFEQLGKAFIKAKNIVDKE--GV-PRFYIRLLSDLEDYLNELWEDKEG 126

  Fly   125 RKNLSKNNSKSLGTLRQKVRKYIKDFEDDLSRFREAP------DQESEAEDEVVALESDGGDAGD 183
            :|.::|||:|:|.|||||:|||.:|||..::.:::.|      |||.: ||...:..||     |
 Frog   127 KKKMNKNNAKALSTLRQKLRKYNRDFEAPIAAYKQNPEESADEDQEKD-EDSEASSSSD-----D 185

  Fly   184 DSDAGVKPTEAVPKAVKSAP-------AKAAPADDDDSDDSIDWDSDS-ESETESSDDENQYQNM 240
            |||.|:..::.:.||..:.|       .|....|::.|.|..||.||| ||:::.|||||:|.:|
 Frog   186 DSDEGMSASKFLKKADSAPPESRSKFLKKEEAEDEESSSDDEDWGSDSDESDSDESDDENKYTSM 250

  Fly   241 RERFLKRTTEKEEKD--DDKRKDK-RKEQKTKIRKRAEDDED--------GEWETVVKG--HVVE 292
            ..||||:|..:.::.  :.|:::| :|:|..|::::.|:.|:        ||||.|..|  .|.|
 Frog   251 ASRFLKKTVNEGDRQAAEKKKEEKAKKKQHRKVKRKDEEGEEEEDDNEGGGEWEKVKGGVPLVKE 315

  Fly   293 KPKMFEKDAEIDVPLVLAKLLEIMSARGKKRTDRRLQIDLLFELRDISDQHNLGTAVSVKIHFNI 357
            |||||.|..||..|:|:.||.||:.|||||.|||..|||||..|..|::::|||..::|||.|||
 Frog   316 KPKMFAKGTEITPPIVVKKLNEILQARGKKGTDRAAQIDLLHLLAGIAEENNLGQGIAVKIKFNI 380

  Fly   358 ISAIYDYNQKISEPMKLEHWALLLEVMQSMMKLLLANADIIMSESVAEEHEEYATS--PFYVRGC 420
            ::::||||..::..||.:.|...|:.:..::.:|.||:::.:.|.::|:.|..:.:  |..||||
 Frog   381 VASLYDYNTNLATYMKADMWKKCLDSIHDLLDILFANSNMFIGEHISEDSENLSNTDQPLRVRGC 445

  Fly   421 PLAAVERLDDEFVKLLKECDPHSNDYVSRLKDEVNVVKTIELVLQYFERSGTNNERCRIYLRKIE 485
            .|..:||:|:||.|:::..||||.:||..||||..|.:.||...:|.:..|:..|.||:|||:|.
 Frog   446 ILTLIERMDEEFTKIMQNTDPHSQEYVDNLKDEARVCEVIERAQKYLQEKGSTEEVCRVYLRRIM 510

  Fly   486 HLYYKFD----------PEVLKKKRGELPATTSTSVDVMDKLCKFIYAKDDTDRIRTRAILAHIY 540
            |.|||||          .:..|.::.:.......|..:||:|||:|||||.||||||.|||.|||
 Frog   511 HTYYKFDYKAHQRQLSTGQESKSEQDQAENEAEDSAILMDRLCKYIYAKDRTDRIRTCAILCHIY 575

  Fly   541 HHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQGNVKDAHHCLVDLMVT 605
            |||:|:.|||||||:|||||||||..|||..:|||||.|..||:||||||.::|||:.|:|:..:
 Frog   576 HHALHNRWFQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGMIRDAHNALLDIQSS 640

  Fly   606 GKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAMLLEIPYIAAHEFD 670
            |:.||||.||||.:...||:.|||||||:||:||||||||||||||||||||||||||:||||||
 Frog   641 GRAKELLGQGLLMRTMQERNQEQEKIEKRRQIPFHMHINLELLECVYLVSAMLLEIPYMAAHEFD 705

  Fly   671 ARRRMISKTFYQQLRSSERQSLVGPPESMREHVVAAAKAMRCGNWQACANFIVNKKMNTKVWDLF 735
            ||||||||.|:.|||..|||.|:|||||||||||||:|||:.|:|:.|.|||:|:|||.||||||
 Frog   706 ARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCKNFIINEKMNGKVWDLF 770

  Fly   736 YESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEELMAS 800
            .|::|||.||.:.|:||||||||||||:||.||.:..|..|::|.:|.|||||||||||||||||
 Frog   771 PEAERVRSMLIRKIQEESLRTYLFTYSSVYDSIRMGILGDMFQLEIPTVHSIISKMIINEELMAS 835

  Fly   801 LDDPSETVGMHRSEPSRLQALAMQFVDKVTNLVDVNEKVFDMKQGNFFQRGNMGNRGDRGYNRNQ 865
            ||.|::||.||.:|||.||..|:|..:|:.|||:.||::||.|||::   |...|||||| :|:|
 Frog   836 LDQPTQTVVMHGTEPSSLQNTALQLAEKLGNLVENNERIFDHKQGSY---GGYFNRGDRG-DRDQ 896

  Fly   866 NNQGGNWLGQRRDRNNRNRNQRGHHKNNQDRQQQQQ 901
            .:|             ..|.:.|:.:....|.||.|
 Frog   897 KDQ-------------YQRKEGGYMRRGYRRDQQGQ 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3cNP_001286545.1 eIF-3c_N 24..671 CDD:283193 335/685 (49%)
PAM 744..823 CDD:214803 52/78 (67%)
eif3cNP_989413.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37 18/35 (51%)
eIF-3c_N 31..706 CDD:283193 335/684 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..308 51/159 (32%)
PINT 779..864 CDD:214509 54/84 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 885..922 15/49 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 462 1.000 Domainoid score I474
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2781
Inparanoid 1 1.050 905 1.000 Inparanoid score I366
OMA 1 1.010 - - QHG54519
OrthoDB 1 1.010 - - D120738at33208
OrthoFinder 1 1.000 - - FOG0003671
OrthoInspector 1 1.000 - - oto104082
Panther 1 1.100 - - LDO PTHR13937
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R378
SonicParanoid 1 1.000 - - X2545
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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