DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and si:ch211-119o8.4

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_001920980.2 Gene:si:ch211-119o8.4 / 799453 ZFINID:ZDB-GENE-070912-15 Length:354 Species:Danio rerio


Alignment Length:307 Identity:77/307 - (25%)
Similarity:128/307 - (41%) Gaps:51/307 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 IVPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNT-YILSLALADLLVIITTVPLASTVYTVEY 146
            ::|::..|..:|||.|:..:.:|.:...:.|:.|:: .:|:|:.|||..:: |:|......:.:.
Zfish    23 VLPLVSILSLLVGVGGHLLMWLVLMRNPRRRSKPSSVLLLNLSFADLCALL-TLPCVLLSASSQN 86

  Fly   147 WPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLA-TAVSI 210
            |..|..:|.|..||..::.||.:|:|.|||..||..:....|.        .||...:| |...|
Zfish    87 WQLGGGVCVLLSFMTSLTAGVDIFSLAALSVLRYRIVAPSTRP--------PATPAQVAGTVAVI 143

  Fly   211 WLLAILCGLPALIGSNLKHLGINEKSIVICYPYPEEWGINYAKSMVLL--HFLVYYAIPLVVIAV 273
            ||::|...||              |...|.:.....|.:.....:..|  .|||||..||:.||:
Zfish   144 WLVSIAMALP--------------KVTYIQFDGGCTWSVGRGHWLGFLVPAFLVYYVAPLLCIAL 194

  Fly   274 FYVLIALHLMYSASVPGEIQGAVRQVRARRKVAVTVLAFVVIFGICFLPYHVFFLWFYFWPT--- 335
            ...||..||.       ..:|.:......:|....::...::|.|.:|||:|........|:   
Zfish   195 HCGLIITHLY-------RCRGTLAADHRNKKATALLIGSTLVFAISWLPYYVLEFVNVLSPSLNS 252

  Fly   336 -------------AQDDYNAFWHVLRIVAYCMSFANSCANPVALYFV 369
                         :..:.:..|.|..:.|..:.....|.|| .|||:
Zfish   253 ASPGPDPTAPSSASSTEVSLLWEVTSLSAILLICLAPCWNP-PLYFL 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 30/100 (30%)
7tm_1 98..364 CDD:278431 68/285 (24%)
si:ch211-119o8.4XP_001920980.2 7tm_classA_rhodopsin-like 26..300 CDD:320086 76/304 (25%)
TM helix 1 26..49 CDD:320086 6/22 (27%)
TM helix 2 57..82 CDD:320086 7/25 (28%)
TM helix 3 94..124 CDD:320086 13/29 (45%)
TM helix 4 135..153 CDD:320086 6/17 (35%)
TM helix 5 173..198 CDD:320086 10/24 (42%)
TM helix 6 214..244 CDD:320086 7/29 (24%)
TM helix 7 255..300 CDD:320086 9/45 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45695
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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