DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and ednrb2

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_012824137.1 Gene:ednrb2 / 780133 XenbaseID:XB-GENE-1219159 Length:435 Species:Xenopus tropicalis


Alignment Length:438 Identity:137/438 - (31%)
Similarity:201/438 - (45%) Gaps:79/438 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIANLVSMETDLAMNIGLDTSGEAPTALPPMPNVTETLWDLAMVVSQSTQWPLLDTGSSENFSEL 65
            :|..:...:|....|            .|.:.|.:|.|       :|.....::...|.:|..||
 Frog    15 LIVGVCCQDTQTQQN------------FPDISNPSEEL-------NQEQAHRIVQLDSIQNGGEL 60

  Fly    66 ------VTTETPYVPYG-------RRPETYIVPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPN 117
                  |...:|..|..       |....|:..||..:||:||::||.||:.:....:.|||.||
 Frog    61 NMSASNVLNLSPPPPSPCVSRAKIRHAFKYVTTILSCVIFLVGIVGNSTLLRIIYKNKCMRNGPN 125

  Fly   118 TYILSLALADLLVIITTVPLASTVYTVEYWPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFA 182
            ..|.||||.||..|:..:|:.......|:||:|..:|.|..|::..||||:|.:|.|||.|||.|
 Frog   126 VLIASLALGDLFYILIAIPIHIYKLLAEHWPFGVHICKLVPFIQKASIGVTVLSLCALSIDRYRA 190

  Fly   183 IVDPLRKFHAHGGG---RRATRMTLATAVSIWLLAILCGLPALIGSNLKHLGINEKSIVICYPYP 244
            :....|   ..|.|   .:|..:||     ||.:||:..:|..|..||..|....::|::|. .|
 Frog   191 VASWNR---IQGIGIPVWKAIELTL-----IWAVAIILAVPEAIAFNLVELDFRGQTILVCM-LP 246

  Fly   245 EEWGIN----YAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMYSASVPGEIQGAVR-QVRARRK 304
            .|...:    |.::.|...|..|:.:||....|||.|::..::   |:...::.|:. .::.||:
 Frog   247 LEQSSDFMRFYQEAKVWWLFGFYFCLPLACTGVFYTLMSCEML---SIKNGMRIALNDHMKQRRE 308

  Fly   305 VAVTVLAFVVIFGICFLPYHVFFLWFYFWPTAQD--DYN-----AFWHVLRIVAYCMSFANSCAN 362
            ||.||...||||.:|:||.||..:   ...|..|  |.|     :|:.|:..:...|:..|||.|
 Frog   309 VAKTVFCLVVIFALCWLPLHVSSI---LKKTVYDGRDPNRCELLSFFMVMNYIGINMASLNSCIN 370

  Fly   363 PVALYFVSGAFRKHFNRYLFCRGASGRRKKRGQHDTFCMHRDTSLTST 410
            ||||||||..|:..|...|.|               :| ||.| ||.|
 Frog   371 PVALYFVSRKFKNCFQSCLCC---------------WC-HRPT-LTIT 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 42/99 (42%)
7tm_1 98..364 CDD:278431 95/280 (34%)
ednrb2XP_012824137.1 7tmA_ET-CR 90..385 CDD:320643 111/309 (36%)
TM helix 1 91..117 CDD:320643 10/25 (40%)
TM helix 2 124..150 CDD:320643 11/25 (44%)
TM helix 3 162..192 CDD:320643 16/29 (55%)
TM helix 4 204..224 CDD:320643 7/24 (29%)
TM helix 5 258..283 CDD:320643 8/24 (33%)
TM helix 6 304..334 CDD:320643 15/32 (47%)
TM helix 7 353..378 CDD:320643 12/24 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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