DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and Ednrb

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_059029.1 Gene:Ednrb / 50672 RGDID:2536 Length:442 Species:Rattus norvegicus


Alignment Length:344 Identity:105/344 - (30%)
Similarity:166/344 - (48%) Gaps:48/344 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 YIVPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEY 146
            ||..|:..|:||:|::||.||:.:....:.|||.||..|.||||.|||.||..:|:.:.......
  Rat   102 YINTIVSCLVFVLGIIGNSTLLRIIYKNKCMRNGPNILIASLALGDLLHIIIDIPINAYKLLAGD 166

  Fly   147 WPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAVSIW 211
            ||:|:.:|.|..|::..|:|::|.:|.|||.|||.|:....|   ..|.|  ..:.|....|.||
  Rat   167 WPFGAEMCKLVPFIQKASVGITVLSLCALSIDRYRAVASWSR---IKGIG--VPKWTAVEIVLIW 226

  Fly   212 LLAILCGLPALIGSNLKHLGINEKSIVIC-------------YPYPEEWGINYAKSMVLLHFLVY 263
            :::::..:|..||.::.......|.:.:|             |...::|.:          |..|
  Rat   227 VVSVVLAVPEAIGFDVITSDYKGKPLRVCMLNPFQKTAFMQFYKTAKDWWL----------FSFY 281

  Fly   264 YAIPLVVIAVFYVLIALHLMYSASVPGEIQGAVR-QVRARRKVAVTVLAFVVIFGICFLPYH--- 324
            :.:||.:.|:||.|:...::...|   .:|.|:. .::.||:||.||...|::|.:|:||.|   
  Rat   282 FCLPLAITAIFYTLMTCEMLRKKS---GMQIALNDHLKQRREVAKTVFCLVLVFALCWLPLHLSR 343

  Fly   325 VFFLWFYFWPTAQDDYN-------AFWHVLRIVAYCMSFANSCANPVALYFVSGAFRKHFNRYLF 382
            :..|..|      |..|       :|..||..:...|:..|||.||:|||.||..|:..|...|.
  Rat   344 ILKLTLY------DQSNPQRCELLSFLLVLDYIGINMASLNSCINPIALYLVSKRFKNCFKSCLC 402

  Fly   383 CRGASGRRKKRGQHDTFCM 401
            |...:...|:..:....|:
  Rat   403 CWCQTFEEKQSLEEKQSCL 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 41/99 (41%)
7tm_1 98..364 CDD:278431 86/289 (30%)
EdnrbNP_059029.1 7tmA_ET-BR 102..397 CDD:320642 100/318 (31%)
TM helix 1 104..128 CDD:320642 9/23 (39%)
TM helix 2 137..159 CDD:320642 12/21 (57%)
TM helix 3 175..197 CDD:320642 8/21 (38%)
TM helix 4 220..236 CDD:320642 3/15 (20%)
TM helix 5 271..294 CDD:320642 7/32 (22%)
TM helix 6 322..344 CDD:320642 9/21 (43%)
TM helix 7 365..390 CDD:320642 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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