DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and SIFaR

DIOPT Version :10

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_650966.2 Gene:SIFaR / 42530 FlyBaseID:FBgn0038880 Length:758 Species:Drosophila melanogaster


Alignment Length:508 Identity:126/508 - (24%)
Similarity:225/508 - (44%) Gaps:115/508 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NLVSMETDLAMNIGLDTSGEAPTALPPMPN----------VTETLWDLAMVVSQSTQWP------ 52
            |.|.::..|:.|....|||...||:..:.:          :|:||....:..:.:|..|      
  Fly    61 NFVDLQNLLSFNELNGTSGSGGTAVSSLGSSSAIKLNNSAITDTLLGTVLTTATATVAPAASSLL 125

  Fly    53 ---------------------LLDTGSSENFSELV-----TTE--------TPY----------- 72
                                 :.|..||..:|.|:     ||.        ..|           
  Fly   126 ATLAATTTASARGSLAGKSLAIADATSSTYYSNLLNLSPATTSLISAAAATKSYNDSALRWEQLD 190

  Fly    73 --VPYGRRP-------ETYIVPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADL 128
              |.:|..|       .:.:..:.:.::|:||::||..:|.|.|...:||.|.|.:|::||:||:
  Fly   191 GSVDFGFDPLYRHSLAMSMVYCVAYIVVFLVGLIGNSFVIAVVLRAPRMRTVTNYFIVNLAIADI 255

  Fly   129 LVIITTVP--LASTVYTVEYWPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFH 191
            |||:..:|  |...::..  |..|..:|....:::.||:..||::|.|:|.||:.||..||::..
  Fly   256 LVIVFCLPATLIGNIFVP--WMLGWLMCKFVPYIQGVSVAASVYSLIAVSLDRFIAIWWPLKQMT 318

  Fly   192 AHGGGRRATRMTLATAVSIWLLAILCGLPALIGSNLKHL-GINEKSIVICYPYP-----EEW--G 248
            .    |||..|    .:.||::|::..:|.|:..:|... .:...::|..|..|     |.|  |
  Fly   319 K----RRARIM----IIGIWVIALVTTIPWLLFFDLVPAEEVFSDALVSAYSQPQFLCQEVWPPG 375

  Fly   249 INYAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMYSASVPGEIQGAV---RQVRARRKVAVTVL 310
            .:.....:|.:.:..|.:|:.:|.:.||||.:.:. :.|:|||.:.|.   .|.:::.||...::
  Fly   376 TDGNLYFLLANLVACYLLPMSLITLCYVLIWIKVS-TRSIPGESKDAQMDRMQQKSKVKVIKMLV 439

  Fly   311 AFVVIFGICFLPYHVFFLWFYFW-PTAQDDYNAFWHVLRIVAYCMSFANSCANPVALYFVSGAFR 374
            |.|::|.:.:||.:|.|....|. ..:|:::.....|:. ||..:..:|||.||: ||.|:..:|
  Fly   440 AVVILFVLSWLPLYVIFARIKFGSDISQEEFEILKKVMP-VAQWLGSSNSCINPI-LYSVNKKYR 502

  Fly   375 KHFNRYLFCRGASGRRK--------------KRGQHDTFCMHRDTSLTSTASK 413
            :.|...:..|...||.:              ::..|    .|:::|..|.:||
  Fly   503 RGFAAIIKSRSCCGRLRYYDNVAIASSTTSTRKSSH----YHQNSSRKSPSSK 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tmA_Bombesin_R-like 82..377 CDD:320593 91/308 (30%)
TM helix 1 83..109 CDD:320593 8/25 (32%)
TM helix 2 116..142 CDD:320593 11/27 (41%)
TM helix 3 154..184 CDD:320593 11/29 (38%)
TM helix 4 201..221 CDD:320593 4/19 (21%)
TM helix 5 252..277 CDD:320593 5/24 (21%)
TM helix 6 300..330 CDD:320593 9/29 (31%)
TM helix 7 345..370 CDD:320593 10/24 (42%)
SIFaRNP_650966.2 7tmA_CCKR-like 209..505 CDD:320124 91/308 (30%)
TM helix 1 210..236 CDD:320124 8/25 (32%)
TM helix 2 243..269 CDD:320124 11/25 (44%)
TM helix 3 281..311 CDD:320124 11/29 (38%)
TM helix 4 322..340 CDD:320124 5/21 (24%)
TM helix 5 379..404 CDD:320124 5/24 (21%)
TM helix 6 429..459 CDD:320124 9/29 (31%)
TM helix 7 474..498 CDD:320124 10/25 (40%)

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