DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCHa1-R and TkR86C

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001097741.1 Gene:TkR86C / 41286 FlyBaseID:FBgn0004841 Length:555 Species:Drosophila melanogaster


Alignment Length:542 Identity:142/542 - (26%)
Similarity:235/542 - (43%) Gaps:120/542 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 METDLAMNIGL------DTSGEAPTALPPMPNVTETLWDLAMVVSQSTQWPLLDTGSSENFSELV 66
            ::|:|.:|..:      :.:....|.|....|.||.:..|:.::...      |...|.|.::..
  Fly     5 VDTELLVNCTILAVRRFELNSIVNTTLLGSLNRTEVVSLLSSIIDNR------DNLESINEAKDF 63

  Fly    67 TTETPYVPYGRRPETYIVP--------ILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSL 123
            .||..: |...||  |.:|        |:|.|:..|.:.|||.::.:....|.||.|.|.::|:|
  Fly    64 LTECLF-PSPTRP--YELPWEQKTIWAIIFGLMMFVAIAGNGIVLWIVTGHRSMRTVTNYFLLNL 125

  Fly   124 ALADLLVIITTVPLASTVYTVEYWPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLR 188
            ::||||:................||:||..|:::.|:.:|::..|||||.|:|.|||.|||.||:
  Fly   126 SIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFTLVAISFDRYIAIVHPLK 190

  Fly   189 KFHAHGGGRRATRMTLATAVSIWLLAILCGLPALIGSNL--KHLGINEKSIVICY------PYPE 245
            :    ...||..|:.|   |.||.|:.:...|.|:.|::  ||. .|.||..:|:      .||.
  Fly   191 R----RTSRRKVRIIL---VLIWALSCVLSAPCLLYSSIMTKHY-YNGKSRTVCFMMWPDGRYPT 247

  Fly   246 EWGINYAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMYSASVPGEIQGAVRQVRARRKVAVTVL 310
            ... :||.::::|  ::.|.||::|:.:.|.|:...|..|.|:.......:..::::|||....:
  Fly   248 SMA-DYAYNLIIL--VLTYGIPMIVMLICYSLMGRVLWGSRSIGENTDRQMESMKSKRKVVRMFI 309

  Fly   311 AFVVIFGICFLPYHVFFLWFYF------WPTAQDDYNAFWHVLRIVAYCMSFANSCANPVALYFV 369
            |.|.||.||:||||:||::.|.      ....|..|..|        |.::.:|:..||:..|::
  Fly   310 AIVSIFAICWLPYHLFFIYAYHNNQVASTKYVQHMYLGF--------YWLAMSNAMVNPLIYYWM 366

  Fly   370 SGAFRKHFNRYLFC-------------------RGASGRRKKRG--------------------- 394
            :..||.:|.|.:.|                   :.:|.|..:.|                     
  Fly   367 NKRFRMYFQRIICCCCVGLTRHRFDSPKSRLTNKNSSNRHTRGGYTVAHSLPNSSPPTTQTLLAV 431

  Fly   395 ----------QHDTFCMHRDTSLT--STASKRFQSRHSCYQSTIR------SCRLQETTITTLPN 441
                      |......|.....|  |.|..:.|.:.|..::.|:      |||.|.:.....|.
  Fly   432 LAQTLTQPKPQTQLLLSHHSPHPTQPSAAETKSQWKRSTMETQIQQAPVTSSCREQRSAQQQQPP 496

  Fly   442 GGNQNGANISAVELALPVLQAP 463
            |   :|.|.:|||.   :::.|
  Fly   497 G---SGTNRAAVEC---IMERP 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 38/99 (38%)
7tm_1 98..364 CDD:278431 89/279 (32%)
TkR86CNP_001097741.1 7tm_4 92..376 CDD:304433 96/302 (32%)
7tm_1 100..363 CDD:278431 90/281 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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