DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and AstC-R1

DIOPT Version :10

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_649040.2 Gene:AstC-R1 / 40020 FlyBaseID:FBgn0036790 Length:483 Species:Drosophila melanogaster


Alignment Length:518 Identity:122/518 - (23%)
Similarity:201/518 - (38%) Gaps:136/518 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 SQSTQWPLLDTGSSENFSEL----VTTETPYVP----YGRRPETY-------------IVPILFA 89
            :.:|.|  .:|..|...:||    ::..:...|    ||....||             ...:|:.
  Fly    23 ANATNW--YNTNESLYTTELNHRWISGSSTIQPEESLYGTDLPTYQHCIATRNSFADLFTVVLYG 85

  Fly    90 LIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEY--WPYGSF 152
            .:.::|:.||..:|.|.|...:|:.|.|.|||:||:||...:| .:|.  .:||:..  |.:|.|
  Fly    86 FVCIIGLFGNTLVIYVVLRFSKMQTVTNIYILNLAVADECFLI-GIPF--LLYTMRICSWRFGEF 147

  Fly   153 LCSLSEFMKDVSIGVSVFT----LTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAVS--IW 211
            :|  ..:|  ||..::.||    |..:|.|||.|:..|:       ...|...:.:|..||  .|
  Fly   148 MC--KAYM--VSTSITSFTSSIFLLIMSADRYIAVCHPI-------SSPRYRTLHIAKVVSAIAW 201

  Fly   212 LLAILCGLPALIGSNL--KHLGINEKSIVICYPYPEEWGINYAKSMVLLHFLVYYAIPLVVIAVF 274
            ..:.:..||.::.::.  :..|||....::   :|:.:..:...:.:|..|.:.:|.||..|..|
  Fly   202 STSAVLMLPVILYASTVEQEDGINYSCNIM---WPDAYKKHSGTTFILYTFFLGFATPLCFILSF 263

  Fly   275 YVLIALHLMYSASVPGEIQGAVRQVRARRKVAVTVLAFVVIFGICFLPYHVFFLWFYFWPTAQDD 339
            |.|:...|......||......|  ||.|||...||..:.::.:|:||:.:..:.......||.|
  Fly   264 YYLVIRKLRSVGPKPGTKSKEKR--RAHRKVTRLVLTVISVYILCWLPHWISQVALIHSNPAQRD 326

  Fly   340 YNAFWHVLRIVAYCMSFANSCANPVALYFVSGAFRKHFNRYLFC-------------------RG 385
            .:....::.::...:.::||..||:...|:|..|||.|.:...|                   :|
  Fly   327 LSRLEILIFLLLGALVYSNSAVNPILYAFLSENFRKSFFKAFTCMNKQDINAQLQLEPSVFTKQG 391

  Fly   386 ASGRRKKRGQHDTFCMHRDTSLTSTASKR-------------FQSRHSCYQSTIRSCRLQETTIT 437
            :    ||||                .|||             ..:.::...:|..|....|.|.|
  Fly   392 S----KKRG----------------GSKRLLTSNPQIPPLLPLNAGNNNSSTTTSSTTTAEKTGT 436

  Fly   438 TLPNGGNQNGANISAVELALPVLQAPGHNEAHAPPSYGFLPLNE--------------IVQQT 486
            |    |.|...|              .:.:..|||....:.|:|              .||||
  Fly   437 T----GTQKSCN--------------SNGKVTAPPENLIICLSEQQEAFCTTARRGSGAVQQT 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tmA_Bombesin_R-like 82..377 CDD:320593 84/317 (26%)
TM helix 1 83..109 CDD:320593 7/25 (28%)
TM helix 2 116..142 CDD:320593 10/25 (40%)
TM helix 3 154..184 CDD:320593 12/33 (36%)
TM helix 4 201..221 CDD:320593 5/21 (24%)
TM helix 5 252..277 CDD:320593 8/24 (33%)
TM helix 6 300..330 CDD:320593 10/29 (34%)
TM helix 7 345..370 CDD:320593 5/24 (21%)
AstC-R1NP_649040.2 7tmA_AstC_insect 78..364 CDD:320222 83/304 (27%)
TM helix 1 79..105 CDD:320222 7/25 (28%)
TM helix 2 112..138 CDD:320222 12/28 (43%)
TM helix 3 149..179 CDD:320222 12/33 (36%)
TM helix 4 191..213 CDD:320222 6/21 (29%)
TM helix 5 241..270 CDD:320222 9/28 (32%)
TM helix 6 287..317 CDD:320222 10/29 (34%)
TM helix 7 332..357 CDD:320222 5/24 (21%)

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