DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and Lkr

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster


Alignment Length:446 Identity:117/446 - (26%)
Similarity:206/446 - (46%) Gaps:65/446 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 LAM-VVSQSTQWPLLDTGSSE-NFSELVTTETPYVPYGRRPETYIVPILFALIFVVGVLGNGTLI 103
            :|| ::.|.::...|.....| .|..|.......|.        ::.|.:..|.:|.|:||..:|
  Fly     1 MAMDLIEQESRLEFLPGAEEEAEFERLYAAPAEIVA--------LLSIFYGGISIVAVIGNTLVI 57

  Fly   104 VVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEYWPYGSFLCSLSEFMKDVSIGVS 168
            .|..:.||||.|.|.||.:||.||:::.:..:|.......::.|....|:||...|::.:|:.||
  Fly    58 WVVATTRQMRTVTNMYIANLAFADVIIGLFCIPFQFQAALLQSWNLPWFMCSFCPFVQALSVNVS 122

  Fly   169 VFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAV-SIWLLAILCGLPALIGSNLKHL-- 230
            ||||||::.||:.||::|||        .|.|:......: .||:||:|..:|..|...::.|  
  Fly   123 VFTLTAIAIDRHRAIINPLR--------ARPTKFVSKFIIGGIWMLALLFAVPFAIAFRVEELTE 179

  Fly   231 --GINEKSIVICYPYPEEWGINYAKSMVLLHFLVY--YAIPLVVIAVFYVLIALHLMYSASVPGE 291
              ..|.::..:..|:.....::..:.....:.||:  |.:|..||:..|:.:|:.| :....||.
  Fly   180 RFRENNETYNVTRPFCMNKNLSDDQLQSFRYTLVFVQYLVPFCVISFVYIQMAVRL-WGTRAPGN 243

  Fly   292 IQGA--VRQVRARRKVAVTVLAFVVIFGICFLPYHVFFLWFYFWPTAQDDYNAFWHVLRIVAYC- 353
            .|.:  :..::.::||...::..|:|||:|:||..::.:.:...|...|     :|.:.||.:| 
  Fly   244 AQDSRDITLLKNKKKVIKMLIIVVIIFGLCWLPLQLYNILYVTIPEIND-----YHFISIVWFCC 303

  Fly   354 --MSFANSCANPVALYFVSGAFRKHFNRYL---FCRGASGRRKKRGQHD-TFCMH-RDTSLTST- 410
              ::.:|||.||......:..|::.||:..   ||:    .:.....|: ||.|| |.:|:.|| 
  Fly   304 DWLAMSNSCYNPFIYGIYNEKFKREFNKRFAACFCK----FKTSMDAHERTFSMHTRASSIRSTY 364

  Fly   411 ASKRFQSRHSCYQSTIRSCRLQETTITTLPNGGNQNGANISAVELALPVLQAPGHN 466
            |:...:.|.:.:                   |..:.|.|.....|.:|.:...|.|
  Fly   365 ANSSMRIRSNLF-------------------GPARGGVNNGKPGLHMPRVHGSGAN 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 39/99 (39%)
7tm_1 98..364 CDD:278431 81/277 (29%)
LkrNP_647968.3 7tm_4 46..329 CDD:304433 85/296 (29%)
7tm_1 52..318 CDD:278431 82/279 (29%)
PHA03216 467..>519 CDD:177558
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45695
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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