DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and Galr2

DIOPT Version :10

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_062045.1 Gene:Galr2 / 29234 RGDID:2657 Length:372 Species:Rattus norvegicus


Alignment Length:349 Identity:117/349 - (33%)
Similarity:175/349 - (50%) Gaps:35/349 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 GRRPETYIVPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLAST 140
            |.:||..:||:.|||||:||.:||..::.|.|...|..:..|.:||:|.:|||..|:..||..:|
  Rat    20 GWQPEAVLVPLFFALIFLVGTVGNALVLAVLLRGGQAVSTTNLFILNLGVADLCFILCCVPFQAT 84

  Fly   141 VYTVEYWPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLA 205
            :||::.|.:||.||....|:..:::..|.|||.|:|.|||.||..||     |....|..|..||
  Rat    85 IYTLDDWVFGSLLCKAVHFLIFLTMHASSFTLAAVSLDRYLAIRYPL-----HSRELRTPRNALA 144

  Fly   206 TAVSIWLLAILCGLPALIGSNLKHLGINEKSIVICYPYPEEWGINYAKSMVLLHFLVYYAIPLVV 270
            ....||.||:|...|.|.......|.    ::.:|:|   .|.....::|.|..|:..|.:|::|
  Rat   145 AIGLIWGLALLFSGPYLSYYRQSQLA----NLTVCHP---AWSAPRRRAMDLCTFVFSYLLPVLV 202

  Fly   271 IAVFYVLIALHLMYSASVPGEIQGAVRQVRARRKVAVTVLAFVVIFGICFLPYHVFFL--WFYFW 333
            :::.|   |..|.|.......:.......||:|||...::...|:|.:|::|:|...|  ||..:
  Rat   203 LSLTY---ARTLRYLWRTVDPVTAGSGSQRAKRKVTRMIIIVAVLFCLCWMPHHALILCVWFGRF 264

  Fly   334 PTAQDDYNAFWHVLRIVAYCMSFANSCANPVALYFVSGAFRKHFNRYLFCRG--------ASGRR 390
            |..:..|     .|||:::.:|:||||.||:....||..|||.|.:  .|.|        ||||.
  Rat   265 PLTRATY-----ALRILSHLVSYANSCVNPIVYALVSKHFRKGFRK--ICAGLLRPAPRRASGRV 322

  Fly   391 K--KRGQHDTFCMHRD-TSLTSTA 411
            .  ..|.|....:.:: |.||..:
  Rat   323 SILAPGNHSGSMLEQESTDLTQVS 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tmA_Bombesin_R-like 82..377 CDD:320593 102/296 (34%)
TM helix 1 83..109 CDD:320593 13/25 (52%)
TM helix 2 116..142 CDD:320593 11/25 (44%)
TM helix 3 154..184 CDD:320593 12/29 (41%)
TM helix 4 201..221 CDD:320593 8/19 (42%)
TM helix 5 252..277 CDD:320593 7/24 (29%)
TM helix 6 300..330 CDD:320593 11/31 (35%)
TM helix 7 345..370 CDD:320593 10/24 (42%)
Galr2NP_062045.1 7tmA_Gal2_Gal3_R 26..303 CDD:320225 102/296 (34%)
TM helix 1 27..53 CDD:320225 13/25 (52%)
TM helix 2 60..86 CDD:320225 11/25 (44%)
TM helix 3 98..128 CDD:320225 12/29 (41%)
TM helix 4 140..160 CDD:320225 8/19 (42%)
TM helix 5 184..213 CDD:320225 9/31 (29%)
TM helix 6 229..259 CDD:320225 11/29 (38%)
TM helix 7 271..296 CDD:320225 11/29 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 353..372
Blue background indicates that the domain is not in the aligned region.

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