DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and Hcrtr2

DIOPT Version :10

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_037206.1 Gene:Hcrtr2 / 25605 RGDID:2788 Length:460 Species:Rattus norvegicus


Alignment Length:477 Identity:128/477 - (26%)
Similarity:202/477 - (42%) Gaps:121/477 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 WDLAMVVSQSTQWPLLDTG--SSENFSELVTTETPYVPYGRRPETY--IVPILFALIFVVGVLGN 99
            |..|..::: ||.|.|:..  ..|.|...:..|  |:    .|:.|  ::...:.::|||.::||
  Rat    15 WSSASELNE-TQEPFLNPTDYDDEEFLRYLWRE--YL----HPKEYEWVLIAGYIIVFVVALIGN 72

  Fly   100 GTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEYWPYGSFLCSLSEFMKDVS 164
            ..:.|.......||.|.|.:|::|:|||:||.||.:|....|...|.|.:|..||.:..:::.||
  Rat    73 VLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLPATLVVDITETWFFGQSLCKVIPYLQTVS 137

  Fly   165 IGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAVSIWLLAILCGLPALI----GS 225
            :.|||.||:.::.||::||..||.   .....:||..    :.|.||:::.:..:|..|    .|
  Rat   138 VSVSVLTLSCIALDRWYAICHPLM---FKSTAKRARN----SIVVIWIVSCIIMIPQAIVMERSS 195

  Fly   226 NLKHLGINEKSIVICYPYPEEWGIN-YAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMYSASVP 289
            .|..|........:|   .|.||.. |.|...:..|||.|..||.::.:.|:.| ...::...:|
  Rat   196 MLPGLANKTTLFTVC---DERWGGEVYPKMYHICFFLVTYMAPLCLMVLAYLQI-FRKLWCRQIP 256

  Fly   290 G------------------------------EIQGAVRQVRARRKVAVTVLAFVVIFGICFLPYH 324
            |                              .:...::|:|||||.|..::..:::|.||:||..
  Rat   257 GTSSVVQRKWKQPQPVSQPRGSGQQSKARISAVAAEIKQIRARRKTARMLMVVLLVFAICYLPIS 321

  Fly   325 VF-------------------FLWFYFWPTAQDDYNAFWHVLRIVAYCMSFANSCANPVALYFVS 370
            :.                   :.||.|         :.|.|         :|||.|||:...|:|
  Rat   322 ILNVLKRVFGMFTHTEDRETVYAWFTF---------SHWLV---------YANSAANPIIYNFLS 368

  Fly   371 GAFRKHFN-RYLFCRGA---SGRRKKRGQHDTFCMHRDTSLTSTAS-KRFQSRHSCYQSTIRSCR 430
            |.||:.|. .:..|.|.   .|.|..||:            |||.| |...::.|.:.:.   .:
  Rat   369 GKFREEFKAAFSCCLGVHRRQGDRLARGR------------TSTESRKSLTTQISNFDNV---SK 418

  Fly   431 LQE----TTITTLPNGGNQNGA 448
            |.|    |:|:|||..   |||
  Rat   419 LSEHVALTSISTLPAA---NGA 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tmA_Bombesin_R-like 82..377 CDD:320593 94/350 (27%)
TM helix 1 83..109 CDD:320593 6/25 (24%)
TM helix 2 116..142 CDD:320593 11/25 (44%)
TM helix 3 154..184 CDD:320593 11/29 (38%)
TM helix 4 201..221 CDD:320593 3/19 (16%)
TM helix 5 252..277 CDD:320593 8/24 (33%)
TM helix 6 300..330 CDD:320593 11/48 (23%)
TM helix 7 345..370 CDD:320593 8/24 (33%)
Hcrtr2NP_037206.1 Required for response to orexin-A. /evidence=ECO:0000250|UniProtKB:O43614 33..49 4/21 (19%)
7tmA_OXR 55..375 CDD:320336 93/348 (27%)
TM helix 1 56..82 CDD:320336 6/25 (24%)
TM helix 2 89..115 CDD:320336 11/25 (44%)
TM helix 3 127..157 CDD:320336 11/29 (38%)
TM helix 4 168..189 CDD:320336 6/24 (25%)
TM helix 5 220..249 CDD:320336 9/29 (31%)
TM helix 6 297..327 CDD:320336 11/29 (38%)
TM helix 7 343..368 CDD:320336 12/42 (29%)
Orexin_rec2 386..443 CDD:427531 20/70 (29%)

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