DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and Sstr4

DIOPT Version :10

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_037168.1 Gene:Sstr4 / 25555 RGDID:3764 Length:384 Species:Rattus norvegicus


Alignment Length:318 Identity:97/318 - (30%)
Similarity:162/318 - (50%) Gaps:55/318 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 VPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEYWP 148
            :..::||:.:||::||..:|.|.|...:|:...|.|:|:||:||.|.:: :||..::...:.:||
  Rat    46 IQCIYALVCLVGLVGNALVIFVILRYAKMKTATNIYLLNLAVADELFML-SVPFVASAAALRHWP 109

  Fly   149 YGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRAT--RMTLATAVS-- 209
            :|:.||.....:..:::..|||.||.||.|||.|:|.||         |.||  |.::|..::  
  Rat   110 FGAVLCRAVLSVDGLNMFTSVFCLTVLSVDRYVAVVHPL---------RAATYRRPSVAKLINLG 165

  Fly   210 IWLLAILCGLPALIGSNLKHLGINEKSIVIC---YPYPEEWGINYAKSMVLLHFLVYYAIPLVVI 271
            :||.::|..||..:.::.:.....|  .|.|   :|:| .|...:    |:..||:.:.:|::.|
  Rat   166 VWLASLLVTLPIAVFADTRPARGGE--AVACNLHWPHP-AWSAVF----VIYTFLLGFLLPVLAI 223

  Fly   272 AVFYVLIALHLMYSASVPGEIQGAVRQV----------RARRKVAVTVLAFVVIFGICFLPYHVF 326
            .:.|:||.              |.:|.|          |:.:|:...||..|.:|.:|::|::|.
  Rat   224 GLCYLLIV--------------GKMRAVALRAGWQQRRRSEKKITRLVLMVVTVFVLCWMPFYVV 274

  Fly   327 FLWFYFWPTAQDDYNAFWHVLRIVAYCMSFANSCANPVALYFVSGAFRKHFNRYLFCR 384
            .|...|..:.....|   ||..|    :|:|||||||:...|:|..||:.|.|.|..|
  Rat   275 QLLNLFVTSLDATVN---HVSLI----LSYANSCANPILYGFLSDNFRRSFQRVLCLR 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tmA_Bombesin_R-like 82..377 CDD:320593 93/309 (30%)
TM helix 1 83..109 CDD:320593 9/24 (38%)
TM helix 2 116..142 CDD:320593 10/25 (40%)
TM helix 3 154..184 CDD:320593 12/29 (41%)
TM helix 4 201..221 CDD:320593 6/21 (29%)
TM helix 5 252..277 CDD:320593 6/24 (25%)
TM helix 6 300..330 CDD:320593 10/29 (34%)
TM helix 7 345..370 CDD:320593 12/24 (50%)
Sstr4NP_037168.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34
7tmA_SSTR4 44..318 CDD:320639 93/309 (30%)
TM helix 1 45..71 CDD:320639 9/24 (38%)
TM helix 2 78..104 CDD:320639 10/26 (38%)
TM helix 3 115..145 CDD:320639 12/29 (41%)
TM helix 4 157..179 CDD:320639 6/21 (29%)
TM helix 5 204..233 CDD:320639 8/46 (17%)
TM helix 6 248..278 CDD:320639 10/29 (34%)
TM helix 7 286..311 CDD:320639 13/31 (42%)
Blue background indicates that the domain is not in the aligned region.

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