DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and Tacr2

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_542946.1 Gene:Tacr2 / 25007 RGDID:3812 Length:390 Species:Rattus norvegicus


Alignment Length:443 Identity:108/443 - (24%)
Similarity:184/443 - (41%) Gaps:99/443 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ANLVSMETDLAMNIGLDTSGEAPTALPPMPNVTETLWDLAMVVSQSTQWPLLDTGSSENFSELVT 67
            ||::|         ||:::....||. .||.     |.||:       |                
  Rat    10 ANILS---------GLESNATGVTAF-SMPG-----WQLAL-------W---------------- 36

  Fly    68 TETPYVPYGRRPETYIVPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVII 132
             .|.|:               ||: :|.|.||.|:|.:.|:..:||.|.|.:|::||||||.:..
  Rat    37 -ATAYL---------------ALV-LVAVTGNATVIWIILAHERMRTVTNYFIINLALADLCMAA 84

  Fly   133 TTVPLASTVYTVEYWPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGR 197
            ..........:...|.:|...|.........::.||::::||::.|||.|||.|.:.       |
  Rat    85 FNATFNFIYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAADRYMAIVHPFQP-------R 142

  Fly   198 RATRMTLATAVSIWLLAILCGLPALIGSNLKHLGINEKSIVICYPYPEEWGINYAKSMVLLHFLV 262
            .:...|.|....|||:|:....|....|.:.   ::|.:......:|.:   |..|.::|.|.:|
  Rat   143 LSAPSTKAIIAGIWLVALALASPQCFYSTIT---VDEGATKCVVAWPND---NGGKMLLLYHLVV 201

  Fly   263 Y---YAIPLVVIAVFYVLIALHLMYSASVPGEIQGA-VRQVRARRKVAVTVLAFVVIFGICFLPY 323
            :   |.:||:|:...|.:|.|.|...|....:..|| :|.::|::|....::..|:.|.||:|||
  Rat   202 FVLIYFLPLLVMFGAYSVIGLTLWKRAVPRHQAHGANLRHLQAKKKFVKAMVLVVLTFAICWLPY 266

  Fly   324 HVFFLWFYFWPTAQDD--YNAFWHVLRIVAYCMSFANSCANPVALYFVSGAFRKHFNRYLFCRGA 386
            |::|:    ..|.|:|  |:.|...:.:..:.::.:::..||:....::..||..|.....|   
  Rat   267 HLYFI----LGTFQEDIYYHKFIQQVYLALFWLAMSSTMYNPIIYCCLNHRFRSGFRLAFRC--- 324

  Fly   387 SGRRKKRGQHDTFCMHRDTSLTSTASKRFQSRHS-CYQSTIRSCRLQETTITT 438
                         |    ..:|.|...|.:..|: .....:..|..:||...|
  Rat   325 -------------C----PWVTPTEEDRLELTHTPSLSRRVNRCHTKETLFMT 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 34/99 (34%)
7tm_1 98..364 CDD:278431 75/271 (28%)
Tacr2NP_542946.1 7tm_4 42..>168 CDD:304433 42/133 (32%)
7tm_1 50..307 CDD:278431 76/273 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 365..390
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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