DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and Tacr3

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_058749.1 Gene:Tacr3 / 24808 RGDID:3810 Length:452 Species:Rattus norvegicus


Alignment Length:466 Identity:118/466 - (25%)
Similarity:205/466 - (43%) Gaps:101/466 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TDLAMNIGLDTSGEAPTALPPMPNVTETLWDLAMVVSQSTQWPLLDTGSSENFSELV----TTET 70
            ||..:.:|..| |...:||    .|||              |..|..|   |||..:    ||:.
  Rat    11 TDGTVEVGTHT-GNLSSAL----GVTE--------------WLALQAG---NFSSALGLPATTQA 53

  Fly    71 PYVPYGRRPETYIVP--------ILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALAD 127
            |..........::.|        :.:.|:..|.|.||..:|.:.|:.::||.|.|.::::||.:|
  Rat    54 PSQVRANLTNQFVQPSWRIALWSLAYGLVVAVAVFGNLIVIWIILAHKRMRTVTNYFLVNLAFSD 118

  Fly   128 LLVIITTVPLASTVYTV-EYWPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFH 191
            ..|..... |.:.:|.: ..|.:|:..|....|....::..|::::||::.|||.||:|||:.  
  Rat   119 ASVAAFNT-LINFIYGLHSEWYFGANYCRFQNFFPITAVFASIYSMTAIAVDRYMAIIDPLKP-- 180

  Fly   192 AHGGGRRATRMTLATAVSIWLLAILCGLPALIGSNLKHLGINEKSIVICY-PYPEEWGINYAKSM 255
                 |.:...|.....|||:||.|...|..:.|.:|.:    ....:|| .:||....::...:
  Rat   181 -----RLSATATKIVIGSIWILAFLLAFPQCLYSKIKVM----PGRTLCYVQWPEGPKQHFTYHI 236

  Fly   256 VLLHFLVYYAIPLVVIAVFYVLIALHLMYSASVPGEIQGAV-RQVRARRKVAVTVLAFVVIFGIC 319
            :::  ::.|..||:::.|.|.::.:.| :...:||:..... .|::|:|||...::..||.|.||
  Rat   237 IVI--ILVYCFPLLIMGVTYTIVGITL-WGGEIPGDTCDKYHEQLKAKRKVVKMMIIVVVTFAIC 298

  Fly   320 FLPYHVFFL----------WFYFWPTAQDDYNA-FWHVLRIVAYCMSFANSCANPVALYFVSGAF 373
            :|||||:|:          |.|.    |..|.| ||         ::.:::..||:....::..|
  Rat   299 WLPYHVYFILTAIYQQLNRWKYI----QQVYLASFW---------LAMSSTMYNPIIYCCLNKRF 350

  Fly   374 RKHFNRYL----FCRGASGRRKKRGQHDTFCMHRDTSLTSTASKRFQSRHSCYQSTIRS-CRLQE 433
            |..|.|..    |.:.:|              :.:..|.:|   ||   |...||::.: .|::.
  Rat   351 RAGFKRAFRWCPFIQVSS--------------YDELELKTT---RF---HPTRQSSLYTVSRMES 395

  Fly   434 TTITTLPNGGN 444
            .|:...||.|:
  Rat   396 VTVLFDPNDGD 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 31/100 (31%)
7tm_1 98..364 CDD:278431 76/279 (27%)
Tacr3NP_058749.1 7tm_4 81..>204 CDD:304433 40/130 (31%)
7tm_1 89..343 CDD:278431 77/281 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..452 3/7 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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