DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and Pgr15l

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001028533.1 Gene:Pgr15l / 245526 MGIID:2676330 Length:456 Species:Mus musculus


Alignment Length:405 Identity:97/405 - (23%)
Similarity:172/405 - (42%) Gaps:81/405 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 IVPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEYW 147
            ::...:|:|.|:.:.||..:..||:..::::......|.:||::|:|:|:...|.|...:....|
Mouse    74 VLTFAYAVIIVISLFGNSLVCQVFVKHKEIKKSTGLLIFNLAISDILIILLNSPFALARFLSGQW 138

  Fly   148 PYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAVSIWL 212
            .:|..:|.:|.|.:..|:.||..||.|::.||:..|:.|::....|.       ..|.....||.
Mouse   139 VFGRIMCHVSRFAQYCSLHVSTLTLMAVAMDRHRVILHPMKPRLTHS-------QCLFVVAMIWS 196

  Fly   213 LAILCGLPALIGSNLKHL----GINEKSIVICYPYPEEWGINYAKSMVLLHFLVYYAIPLVVIAV 273
            :|:...||..|..||..|    |......:..:|.|   .|..:|.:.|..|::.|.:||:||.|
Mouse   197 IAVFLALPHAIYQNLFTLVNMDGDTRSYCLPSFPGP---SILVSKYVDLGTFILLYILPLLVIVV 258

  Fly   274 FYVLIALHLMYSASVPGEIQGAV-----RQVRA---RRKVAVTVLAFVV-IFGICFLPYHVFFLW 329
            .|..:...|.        ||.|:     ||:.|   :||.::.:|..:| :|.:|:.|.: |::.
Mouse   259 TYSHLGKRLW--------IQNAIGDASARQLMAHYQKRKKSIRMLILIVLVFAVCWFPLN-FYVV 314

  Fly   330 FYFWPTAQDDYNAFWHVLRIVAYCMSFANSCANPVALYFVSGAFRKHFNRYLFCRGASGRRKKRG 394
            .......::|     .||....:..:.:::|.||....:::.:||                    
Mouse   315 LISSAGVEND-----SVLFYAFHWFAMSSTCYNPFIYCWLNRSFR-------------------- 354

  Fly   395 QHDTFCMHRDTSLTSTASKRFQSRHSCYQSTIRSCRLQET-TITTLPNGGNQNGANISAVELALP 458
                      ..|.|.:|.|.||...|..|.::..:.||: .:..|..      :::..|.||:|
Mouse   355 ----------AKLRSISSFRMQSLFVCSNSQVQQIKPQESHELRELQT------SSLLRVPLAVP 403

  Fly   459 VLQ-------APGHN 466
            ..|       |.|.|
Mouse   404 EPQVFEDPSLATGDN 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 30/99 (30%)
7tm_1 98..364 CDD:278431 72/278 (26%)
Pgr15lNP_001028533.1 7tm_4 83..360 CDD:304433 77/330 (23%)
7tm_1 89..346 CDD:278431 73/280 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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