DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCHa1-R and Tacr3

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_067357.1 Gene:Tacr3 / 21338 MGIID:892968 Length:452 Species:Mus musculus


Alignment Length:441 Identity:113/441 - (25%)
Similarity:200/441 - (45%) Gaps:84/441 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 TQWPLLDTGSSENFSEL----VTTETPYVPYGRRPETYIVP--------ILFALIFVVGVLGNGT 101
            |:|..|..|   |||..    ||::.|..........::.|        :.:.|:..|.|.||..
Mouse    31 TEWLALQAG---NFSSALGLPVTSQAPSQVRANLTNQFVQPSWRIALWSLAYGLVVAVAVFGNLI 92

  Fly   102 LIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTV-EYWPYGSFLCSLSEFMKDVSI 165
            :|.:.|:.::||.|.|.::::||.:|..|..... |.:.:|.| ..|.:|:..|....|....::
Mouse    93 VIWIILAHKRMRTVTNYFLVNLAFSDASVAAFNT-LVNFIYGVHSEWYFGANYCRFQNFFPITAV 156

  Fly   166 GVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAVSIWLLAILCGLPALIGSNLKHL 230
            ..|::::||::.|||.||:|||:.       |.:...|.....|||:||.|...|..:.|.:|.:
Mouse   157 FASIYSMTAIAVDRYMAIIDPLKP-------RLSATATKIVIGSIWILAFLLAFPQCLYSKIKVM 214

  Fly   231 GINEKSIVICY-PYPEEWGINYAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMYSASVPGEIQG 294
                ....:|| .:||....::...::::  ::.|..||:::.|.|.::.:.| :...:||:...
Mouse   215 ----PGRTLCYVQWPEGPKQHFTYHIIVI--ILVYCFPLLIMGVTYTIVGITL-WGGEIPGDTCD 272

  Fly   295 AV-RQVRARRKVAVTVLAFVVIFGICFLPYHVFFL----------WFYFWPTAQDDYNA-FWHVL 347
            .. .|::|:|||...::..||.|.||:|||||:|:          |.|.    |..|.| ||   
Mouse   273 KYHEQLKAKRKVVKMMIIVVVTFAICWLPYHVYFILTAIYQQLNRWKYI----QQVYLASFW--- 330

  Fly   348 RIVAYCMSFANSCANPVALYFVSGAFRKHFNRYL----FCRGASGRRKKRGQHDTFCMHRDTSLT 408
                  ::.:::..||:....::..||..|.|..    |.:.:|              :.:..|.
Mouse   331 ------LAMSSTMYNPIIYCCLNKRFRAGFKRAFRWCPFIQVSS--------------YDELELK 375

  Fly   409 STASKRFQSRHSCYQSTIRS-CRLQETTITTLPNGGNQNGANISAVELALP 458
            :|   ||   |...||::.: .|::..|:...|:.|:.  |..|..:.|:|
Mouse   376 TT---RF---HPTRQSSLYTVSRMESVTVLYDPSEGDP--AKSSRKKRAVP 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 32/100 (32%)
7tm_1 98..364 CDD:278431 77/279 (28%)
Tacr3NP_067357.1 7tm_4 81..>204 CDD:304433 41/130 (32%)
7tm_1 89..343 CDD:278431 78/281 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..452 6/20 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.