DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCHa1-R and Tacr1

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_033339.2 Gene:Tacr1 / 21336 MGIID:98475 Length:407 Species:Mus musculus


Alignment Length:400 Identity:108/400 - (27%)
Similarity:190/400 - (47%) Gaps:55/400 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 STQWPLLDTGSSENFSELVTTETPYVPYGRRPETYIV--PILFALIFVVGVLGNGTLIVVFLSVR 110
            |..:|...|.:||: ::.|           :|...||  ...:.:|.|..|:||..:|.:.|:.:
Mouse     9 SDLFPNTSTNTSES-NQFV-----------QPTWQIVLWAAAYTVIVVTSVVGNVVVIWIILAHK 61

  Fly   111 QMRNVPNTYILSLALAD--LLVIITTVPLASTVYTVEYWPYGSFLCSLSEFMKDVSIGVSVFTLT 173
            :||.|.|.::::||.|:  :....|.|.....|:.|  |.||.|.|....|....::..|::::|
Mouse    62 RMRTVTNYFLVNLAFAEACMAAFNTVVNFTYAVHNV--WYYGLFYCKFHNFFPIAALFASIYSMT 124

  Fly   174 ALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAVSIWLLAILCGLPALIGSNLKHLGINEKSIV 238
            |::.|||.||:.||:.       |.:...|......||:||:|...|....|..:.:    .|.|
Mouse   125 AVAFDRYMAIIHPLQP-------RLSATATKVVIFVIWVLALLLAFPQGYYSTTETM----PSRV 178

  Fly   239 IC-YPYPEEWGINYAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMYSASVPGEIQGAV-RQVRA 301
            :| ..:||.....|.|:..:...::.|.:||:||...|.::.:.| :::.:||:..... .||.|
Mouse   179 VCMIEWPEHPNRTYEKAYHICVTVLIYFLPLLVIGYAYTVVGITL-WASEIPGDSSDRYHEQVSA 242

  Fly   302 RRKVAVTVLAFVVIFGICFLPYHVFFLWFYFWPTAQDDY-NAFWHVLRIVAYCMSFANSCANPVA 365
            :|||...::..|..|.||:||:|:|||..|..|   |.| ..|...:.:.:..::.:::..||:.
Mouse   243 KRKVVKMMIVVVCTFAICWLPFHIFFLLPYINP---DLYLKKFIQQVYLASMWLAMSSTMYNPII 304

  Fly   366 LYFVSGAFRKHF-NRYLFCRGASGRRKKRGQHDTFCMHRDTSLTSTASKRFQSRHSCYQSTIRSC 429
            ...::..||..| :.:..|...|.     |.::        .|...:::..|::.|.|:.:    
Mouse   305 YCCLNDRFRLGFKHAFRCCPFISA-----GDYE--------GLEMKSTRYLQTQSSVYKVS---- 352

  Fly   430 RLQETTITTL 439
            || ||||:|:
Mouse   353 RL-ETTISTV 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 33/101 (33%)
7tm_1 98..364 CDD:278431 78/270 (29%)
Tacr1NP_033339.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20 3/10 (30%)
7tm_GPCRs 33..316 CDD:391938 85/299 (28%)
TM helix 1 35..59 CDD:341315 6/23 (26%)
TM helix 2 68..90 CDD:341315 6/21 (29%)
TM helix 3 106..128 CDD:341315 4/21 (19%)
TM helix 4 149..165 CDD:341315 5/15 (33%)
TM helix 5 194..217 CDD:341315 6/22 (27%)
TM helix 6 244..269 CDD:341315 11/24 (46%)
TM helix 7 284..309 CDD:341315 2/24 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 362..407 108/399 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.