DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and tkr-1

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_499064.2 Gene:tkr-1 / 192055 WormBaseID:WBGene00006576 Length:406 Species:Caenorhabditis elegans


Alignment Length:395 Identity:99/395 - (25%)
Similarity:166/395 - (42%) Gaps:90/395 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 VPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEY-W 147
            |.|.|.|:....::||..::.:....:.|....|.::.::|.||||:.:..|. .|..|.:.| |
 Worm    46 VAIAFVLLMATAIIGNSVVMWIIYQHKVMHYGFNYFLFNMAFADLLIALFNVG-TSWTYNLYYDW 109

  Fly   148 PYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAV-SIW 211
            .||. ||:|:.|.......|||.::.|||.||..|:|:||:|       |..:|.....|: .||
 Worm   110 WYGD-LCTLTSFFGIAPTTVSVCSMMALSWDRCQAVVNPLQK-------RPLSRKRSVIAILIIW 166

  Fly   212 LLAILCGLPALIGSNLKHL-------GINEKSIVICYPYPEEWGINYAKSMVLLHFLVYYAIPLV 269
            :::.:..||..|.:::..|       ....|:.|...|      :|.....||  |.:.||:|::
 Worm   167 VVSTVTALPFAIAASVNSLYTYDVVTSTVSKAHVCSAP------VNTFFEKVL--FGIQYALPII 223

  Fly   270 VIAVFYVLIALHL-MYSASVPGEIQGAVRQVRARRKVAVTVLAFVVIFGICFLPYHVF--FLWFY 331
            ::...:..||:.. ..:.:....::.  ...||:.|....:...||.|.:|:||||::  |....
 Worm   224 ILGSTFTRIAVAFRATNEATDSSLKN--NHTRAKSKAVKMLFLMVVAFVVCWLPYHIYHAFALEE 286

  Fly   332 FWPTAQDDYNAFWHVLRIVAYCMSF---ANSCA-NPVALYFVSGAFRKHFNRYLF-------CRG 385
            |:..|:..|          ||.:.:   .:||| ||:...|.:..||..| ||:|       |:.
 Worm   287 FFDAARGKY----------AYLLIYWIAMSSCAYNPIIYCFANERFRIGF-RYVFRWIPVIDCKK 340

  Fly   386 --------------------ASGR---------RKKRGQHDTFC-MHRDTSLTSTASKRFQSRH- 419
                                ..||         .|:....|..| ||.:.:     :|::...| 
 Worm   341 EQYEYSQLFPDKMRSMAISLQKGRVNSSCLDKKVKENSSQDLVCVMHSEKN-----TKKYSKVHL 400

  Fly   420 -SCYQ 423
             ||::
 Worm   401 LSCHE 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 33/100 (33%)
7tm_1 98..364 CDD:278431 75/281 (27%)
tkr-1NP_499064.2 7tm_4 58..330 CDD:304433 82/301 (27%)
7tm_1 60..315 CDD:278431 76/283 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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