DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and npr-9

DIOPT Version :10

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001361821.1 Gene:npr-9 / 191320 WormBaseID:WBGene00013974 Length:431 Species:Caenorhabditis elegans


Alignment Length:237 Identity:45/237 - (18%)
Similarity:82/237 - (34%) Gaps:80/237 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 EPLAYEDVLLVLTHLAQFHAISFAMQQQAPDAYAQIVSELQE--------TIFVPPLHSSFVDFL 225
            :|...|.|..::.|..:.|             .|:::..|::        ::|:|.:::.::|| 
 Worm   120 DPRQSELVFNLVKHECEPH-------------IAELIQSLEKNCSGSDDPSVFLPHVYNRWLDF- 170

  Fly   226 QRKV----DYAI------------------ETLQRNPAAGDGAVAERLCRFRDE-YGQA---MVD 264
            :||:    |.|:                  :.|...|...|..:...|....|| .|:|   ..|
 Worm   171 KRKMSLVSDVAMYQTLNGLTLWDVGQKLFHKQLSMAPQLQDQVITGILRLITDERLGKAANNTSD 235

  Fly   265 CVQNRDDTVICHGDCW------------------ISNILYRPMNAKELKFLD----WQVARCATP 307
            .::|..|.......|.                  ...:|.|...:..||:::    .:..:|   
 Worm   236 LLKNLMDMFRMQWQCTYVYKDPFLDSTSKFYAEEAEQVLQRSDISHYLKYVERTFLAEEEKC--- 297

  Fly   308 AIDLSYFIFCCTDSELRERLPELLRKYHSALVRR-----MDE 344
              |..||.|..:.|.|.:.|...|.:.||:.:..     |||
 Worm   298 --DKHYFFFSSSRSRLMKVLKSQLLEAHSSFLEEGFMLLMDE 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tmA_Bombesin_R-like 82..377 CDD:320593 45/237 (19%)
TM helix 1 83..109 CDD:320593
TM helix 2 116..142 CDD:320593
TM helix 3 154..184 CDD:320593 4/14 (29%)
TM helix 4 201..221 CDD:320593 4/27 (15%)
TM helix 5 252..277 CDD:320593 7/28 (25%)
TM helix 6 300..330 CDD:320593 8/29 (28%)
TM helix 7 345..370 CDD:320593 45/237 (19%)
npr-9NP_001361821.1 7tmA_AstA_R_insect 30..340 CDD:320224 45/237 (19%)
TM helix 1 31..57 CDD:320224
TM helix 2 63..89 CDD:320224
TM helix 3 101..131 CDD:320224 3/10 (30%)
TM helix 4 143..163 CDD:320224 3/19 (16%)
TM helix 5 197..226 CDD:320224 6/28 (21%)
TM helix 6 261..291 CDD:320224 4/29 (14%)
TM helix 7 308..333 CDD:320224 6/24 (25%)
Blue background indicates that the domain is not in the aligned region.

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