DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and npr-22

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001023541.1 Gene:npr-22 / 190424 WormBaseID:WBGene00022004 Length:434 Species:Caenorhabditis elegans


Alignment Length:423 Identity:109/423 - (25%)
Similarity:191/423 - (45%) Gaps:77/423 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 LDTGSSENF--SELVTTETPYVP-----YGRRPETYIVPILF-ALIFVVGVLGNGTLIVVFLSVR 110
            :.|.:||..  :|..|||.|.|.     |...|...::.||| :::.|..|.||..:|:|.:..:
 Worm    15 ITTTASEIMMRNEPTTTENPAVQEMNHIYHLTPSMKMLCILFYSILCVCCVYGNVLVILVIVYFK 79

  Fly   111 QMRNVPNTYILSLALADLLVIITTVPLA---STVYTVEYWPYGSFLCSLSEFMKDVSIGVSVFTL 172
            ::|...|..||:||:||||:.:..:|.:   ..:|..:.|.:||.:|||..|::.:::.:|.:||
 Worm    80 RLRTATNILILNLAVADLLISVFCIPFSYWQVLIYDDQRWLFGSMMCSLLAFLQAMAVFLSAWTL 144

  Fly   173 TALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAVSIWLLAILCGLPALI-------------- 223
            ..:|.||:.||:     |......|...|..|....:.|:.:||..||.|.              
 Worm   145 VVISFDRWMAIM-----FLLTPNIRITRRRALYLVAATWIFSILMALPLLFTTRFFEDQDGLPNC 204

  Fly   224 GSNLKHLGINEKSIVICYPYPEEWGINYAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMYSASV 288
            |.|..:.|.:.:.:...|           .||||   ::.|.:|..|:.:.|..|.:. |:::.|
 Worm   205 GENWTYFGDSGEQVRKVY-----------SSMVL---ILQYVVPQAVLIITYTHIGIK-MWNSRV 254

  Fly   289 PGEIQGAVRQV-----RARRKVAVTVLAFVVIFGICFLPYHVFFLWFYFWPTAQDDYNAFWHVLR 348
            ||...||.:::     .:.:|:...|:....:|.:|:||   ..:.....|....|.|::.::|.
 Worm   255 PGMQNGATKKMIVDRHESVKKLVPMVILISALFALCWLP---LLILINVIPEFYPDINSWGYILY 316

  Fly   349 I--VAYCMSFANSCANPVALYFVSGA-FRKHF----NRYLFCRGASGRRKKRGQHDTFCMHRDTS 406
            :  .|:.::.::|..||: :||:..| ||:.|    ::.|.|......|               .
 Worm   317 LWWFAHGLAMSHSMVNPI-IYFIRNARFREGFCFFSSKLLPCISFKELR---------------L 365

  Fly   407 LTSTASKRFQSRHSCYQSTIRSCRLQETTITTL 439
            ||...|:.|::| |.:...|......|...|:|
 Worm   366 LTDNTSRSFRNR-SRFSGVINPTSSDEKPATSL 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 34/103 (33%)
7tm_1 98..364 CDD:278431 73/289 (25%)
npr-22NP_001023541.1 7tmA_PR4-like 51..347 CDD:320514 84/319 (26%)
TM helix 1 52..78 CDD:320514 9/25 (36%)
TM helix 2 85..110 CDD:320514 10/24 (42%)
TM helix 3 126..156 CDD:320514 11/29 (38%)
TM helix 4 169..190 CDD:320514 6/20 (30%)
TM helix 5 219..248 CDD:320514 10/42 (24%)
TM helix 6 271..301 CDD:320514 6/32 (19%)
TM helix 7 315..340 CDD:320514 7/25 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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