DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and tkr-3

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001343603.1 Gene:tkr-3 / 177285 WormBaseID:WBGene00006428 Length:400 Species:Caenorhabditis elegans


Alignment Length:399 Identity:94/399 - (23%)
Similarity:169/399 - (42%) Gaps:75/399 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 LLDTGSSE-----NFSELVTTETPYVPYGRRPETYIVPILFALIFVVGVLGNGTLIVVFLSVRQM 112
            |.:.|.:|     :|.||    ||.       |..|..:|:|:|..:.|:||..::.:.|...::
 Worm    24 LAEAGEAELSGDDDFYEL----TPV-------ELIIWCMLYAIIAFMAVVGNLLVLYITLFRLRV 77

  Fly   113 RNVPNTYILSLALADLLVIITTVPLASTVYTVEYWPYGSFLCSLSEFMKDVSIGVSVFTLTALSG 177
            |::...:||:|..|||...|..:|........:.|.....||.:..:::.|::.||||||..   
 Worm    78 RSITTYFILNLGFADLFTGIFAIPFKFQAALFQEWFLPRSLCRIVPYVETVALTVSVFTLVT--- 139

  Fly   178 DRYFAIVDPLRKFHAHGGGRRATRMTLATAVSIWLLAILCGLP-ALIGSNLKHLGINEKSIVICY 241
                :.|...|........:.:.|......:.||::|:|..|| .|..:..:....|..|||.|.
 Worm   140 ----SAVHEFRTMFFSKCSQMSPRSAKRCVLLIWIMAVLVSLPHGLFHNTYEFPDDNNTSIVQCL 200

  Fly   242 P-YPEE-WGINYAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMYSASVPGEIQGAVRQVRARRK 304
            | ||:. |...|...:|    ::.|.:|::::...|.:||:.:...:....|:.   ....|.:|
 Worm   201 PVYPDAGWWKTYNVYLV----IIQYFVPMIILDTAYTMIAVKIWSLSQSRVELD---ETKMATQK 258

  Fly   305 VAV---------------TVLAFVVIFGICFLPYHVFFLWFYFWPTAQDDYNAFWHVLRIV---A 351
            ::|               |::..|..|.:|:.|...:.|.....|    :.|. |..:.:|   :
 Worm   259 ISVVSMVSPNTQLSQLMRTLIIVVACFSLCWFPLETYLLLNELKP----EING-WKYINLVFFFS 318

  Fly   352 YCMSFANSCANPVALYFVSGAFRKHFN---RYLFCR-GASGRRKKRGQHDTFCMHRDTSLTSTAS 412
            :.::.:|||.||:    :.|.:...:|   |.||.: |...:|:|         ..|.|:  ...
 Worm   319 HWLAMSNSCLNPI----IYGLYNTKYNEEYRRLFRQIGCIWQRQK---------SLDDSM--KPE 368

  Fly   413 KRFQSRHSC 421
            :|:.|.:.|
 Worm   369 RRWNSSNDC 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 26/99 (26%)
7tm_1 98..364 CDD:278431 66/286 (23%)
tkr-3NP_001343603.1 7tm_GPCRs 47..344 CDD:391938 74/319 (23%)
TM helix 1 48..74 CDD:341315 8/25 (32%)
TM helix 2 81..106 CDD:341315 8/24 (33%)
TM helix 3 119..149 CDD:341315 10/36 (28%)
TM helix 4 160..181 CDD:341315 6/20 (30%)
TM helix 5 209..238 CDD:341315 7/32 (22%)
TM helix 6 254..299 CDD:341315 9/44 (20%)
TM helix 7 312..337 CDD:341315 7/28 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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