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Protein Alignment CCHa1-R and Cckar

DIOPT Version :10

Sequence 1:	NP_611241.2	Gene:	CCHa1-R / 37004	FlyBaseID:	FBgn0050106	Length:	499	Species:	Drosophila melanogaster
Sequence 2:	NP_033957.1	Gene:	Cckar / 12425	MGIID:	99478	Length:	436	Species:	Mus musculus

Alignment Length:	390	Identity:	93/390 - (23%)
Similarity:	166/390 - (42%)	Gaps:	101/390 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly    86 ILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEYWPYG 150
            :|::.||::.||||..:|.|.:..::||.|.|.::||||::||::.:..:|.......::.:.:|
Mouse    46 LLYSFIFLLSVLGNTLVITVLIRNKRMRTVTNIFLLSLAVSDLMLCLFCMPFNLIPNLLKDFIFG 110

  Fly   151 SFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLR------KFHAHGGGRRATRMTLATAVS 209
            |.:|..:.:....|:.||.|.|.|:|.:||.||..||:      |.||           |....:
Mouse   111 SAVCKTTTYFMGTSVSVSTFNLVAISLERYGAICRPLQSRVWQTKSHA-----------LKVIAA 164

  Fly   210 IWLLAILCGLPALIGSNL----KHLGINEKSIVIC-YPYPEEWGINYAKSMVLLHFLVYYAIPLV 269
            .|.|:.....|..|.|||    |:   |.::..:| :..|.: .:..:....||  |:.:.||.|
Mouse   165 TWCLSFTIMTPYPIYSNLVPFTKN---NNQTANMCRFLLPSD-AMQQSWQTFLL--LILFLIPGV 223

  Fly   270 VIAVFYVLIALHL-----------------------------------------MYSASVPGEIQ 293
            |:.|.|.||:|.|                                         :..:..|.:::
Mouse   224 VMVVAYGLISLELYQGIKFDASQKKSAKEKRLSSGGGGGGGSSSSRYEDSDGCYLQKSRPPRKLE 288

  Fly   294 ----------GAVRQVR---------ARRKVAVTVLAFVVIFGICFLPYHVFFLWFYFWPTAQDD 339
                      |.:.::|         |:::|...::..||:|.:|::|......|     .|.|.
Mouse   289 LQQLSTSSSGGRINRIRSSGSAANLIAKKRVIRMLIVIVVLFFLCWMPIFSANAW-----RAYDT 348

  Fly   340 YNAFWHV----LRIVAYCMSFANSCANPVALYFVSGAFRKHFNRYLFC---RGASGRRKKRGQHD 397
            .:|..|:    :..: ..:|:.:||.||:...|::..||..|.....|   .|.:|.|.:.|:.:
Mouse   349 VSAEKHLSGTPISFI-LLLSYTSSCVNPIIYCFMNKRFRLGFMATFPCCPNPGPTGVRGEVGEEE 412

Fly 398 397
Mouse 413 412

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.