DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and brs3

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_002932668.2 Gene:brs3 / 100488712 XenbaseID:XB-GENE-960289 Length:402 Species:Xenopus tropicalis


Alignment Length:363 Identity:131/363 - (36%)
Similarity:199/363 - (54%) Gaps:27/363 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 MP----NVTETLWDLAMVVSQSTQWPLLDTGSSENFSELVTTETPYVPYGRRPETYIVPILFALI 91
            ||    |:.|||    ..|:::|.......||...:.|.....:|     |......:.|.:|:|
 Frog     1 MPEGYLNLNETL----SSVTKNTAHLRFSNGSDALYQEESADLSP-----RLEVLATISITYAVI 56

  Fly    92 FVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEYWPYGSFLCSL 156
            ..||:|||..||.||..|:.|:.|||.:|.|||..|||:::|.||:.::.|.|:.|.:|...|.:
 Frog    57 ISVGLLGNTILIKVFFKVKSMQTVPNIFITSLAFGDLLLLLTCVPVDASRYMVDTWLFGRMGCKI 121

  Fly   157 SEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAVSIWLLAILCGLPA 221
            ..|::..|:||||||||.||.|||.|||.||....:.     |...|...|..:|::::|...|.
 Frog   122 LSFIQLTSVGVSVFTLTVLSADRYRAIVKPLELQTSD-----AVLKTCGKAACVWIISMLLAAPE 181

  Fly   222 LIGSNLKHLGINEK--SIVICYPYPEEWGINYAKSMVLLHFLVYYAIPLVVIAVFYVLIALHLMY 284
            .:.|:|......:|  |...|.|||....: ..::..|:.|||:|.:||.:|:.:|:|||..|..
 Frog   182 AVFSDLYEFSSPDKNTSFKACAPYPVSEKL-MQETHSLMCFLVFYIVPLSIISAYYILIAKTLYK 245

  Fly   285 SA-SVPGEIQ-GAVRQVRARRKVAVTVLAFVVIFGICFLPYHVFFLWFYFWPTAQDDYN-AFWHV 346
            |. ::|.|.. .|.:|:.:|::||.|||..|.:|..|:||.|:.:|:..|  |.....| :..|:
 Frog   246 STFNMPAEEHTHARKQIESRKRVAKTVLVLVALFAFCWLPNHILYLYRSF--TYHSAVNSSMLHL 308

  Fly   347 -LRIVAYCMSFANSCANPVALYFVSGAFRKHFNRYLFC 383
             ..|.|..::|:|||.||.|||::|.:||:||.:.::|
 Frog   309 SATIFARILAFSNSCVNPFALYWLSRSFRQHFKKQVYC 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 50/99 (51%)
7tm_1 98..364 CDD:278431 102/271 (38%)
brs3XP_002932668.2 7tm_GPCRs 47..340 CDD:421689 115/300 (38%)
TM helix 1 48..74 CDD:410628 12/25 (48%)
TM helix 2 81..107 CDD:410628 12/25 (48%)
TM helix 3 119..149 CDD:410628 17/29 (59%)
TM helix 4 161..181 CDD:410628 4/19 (21%)
TM helix 5 213..238 CDD:410628 9/24 (38%)
TM helix 6 263..293 CDD:410628 13/29 (45%)
TM helix 7 308..333 CDD:410628 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 177 1.000 Domainoid score I3525
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 217 1.000 Inparanoid score I3495
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1153238at2759
OrthoFinder 1 1.000 - - FOG0001846
OrthoInspector 1 1.000 - - mtm9554
Panther 1 1.100 - - O PTHR45695
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4897
SonicParanoid 1 1.000 - - X1046
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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