DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and tacr3

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:XP_002934808.1 Gene:tacr3 / 100486525 XenbaseID:XB-GENE-985728 Length:431 Species:Xenopus tropicalis


Alignment Length:462 Identity:117/462 - (25%)
Similarity:199/462 - (43%) Gaps:97/462 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LVSMETDLAMNIGLDTSGEAPTALPPMPNVTETLWDLAMVVSQSTQWPLLDTGSSENFSELVTTE 69
            :.||.|:|       |:||......|:              .:...||   ..:..|.|..|..:
 Frog     1 MTSMPTNL-------TTGEVIGIFAPL--------------GEGVLWP---NSTQRNVSSPVAHK 41

  Fly    70 TPYVPYGRRPETYIVPILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADL-LVIIT 133
            ....|:    ...:..:.:..:..|.|.||..:|.:.|:.::||.|.|.::::||.:|. :....
 Frog    42 FVQPPW----RIALWSLAYGSMVAVAVFGNIIVIWIILAHKRMRTVTNYFLVNLAFSDASMAAFN 102

  Fly   134 TVPLASTVYTV-EYWPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGR 197
            |  |.:.:|.: ..|.:|...|....|....||..|:::::|::.|||.||:|||:.       |
 Frog   103 T--LVNFIYALHNEWYFGEAYCRFHNFFPITSIFASIYSMSAIAVDRYMAIIDPLKP-------R 158

  Fly   198 RATRMTLATAVSIWLLAILCGLPALIGSNLKHLGINEKSIVIC---YPYPEEWGINYAKSMVLLH 259
            .:...|.....|||:.|||...|..:.|.::    ..::..:|   :|..:| .:.|...:||| 
 Frog   159 LSATSTKVVIGSIWIFAILLAFPQCLYSKIR----VTRTRTLCMLVWPGKDE-RLTYQFILVLL- 217

  Fly   260 FLVYYAIPLVVIAVFYVLIALHLMYSASVPGEIQGAV-RQVRARRKVAVTVLAFVVIFGICFLPY 323
               .|.:||:|:.|.|.::.:.| :...:||:..... .|:||:|||...::..||.|.||:|||
 Frog   218 ---VYVLPLIVMGVTYTIVGITL-WGGEIPGDTSDKYHEQLRAKRKVVKMMIVVVVTFAICWLPY 278

  Fly   324 HVFFL----------WFYFWPTAQDDYNA-FWHVLRIVAYCMSFANSCANPVALYFVSGAFRKHF 377
            |:|||          |.|.    |..|.| ||         ::.:::..||:....::..||..|
 Frog   279 HIFFLADALDIKLDRWKYI----QQIYLAIFW---------LAMSSTMYNPIIYCCLNKRFRAGF 330

  Fly   378 NR-YLFCRGASGRRKKRGQHDTFCMHRDTSLTSTASKRFQSRHSCYQSTIRSCRLQETTITTL-- 439
            .| :.:|           .......:.:..|.||   ||   |...||::.:....|:::|.:  
 Frog   331 KRAFRWC-----------PFIEVSSYDELELKST---RF---HPTRQSSLYTVSRMESSMTVVFD 378

  Fly   440 PNGGNQN 446
            ||....|
 Frog   379 PNDVENN 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 31/101 (31%)
7tm_1 98..364 CDD:278431 82/282 (29%)
tacr3XP_002934808.1 7tm_4 58..>181 CDD:304433 40/131 (31%)
7tm_1 66..319 CDD:278431 83/284 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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