DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa1-R and tacr2

DIOPT Version :9

Sequence 1:NP_611241.2 Gene:CCHa1-R / 37004 FlyBaseID:FBgn0050106 Length:499 Species:Drosophila melanogaster
Sequence 2:NP_001314788.1 Gene:tacr2 / 100002125 ZFINID:ZDB-GENE-090312-188 Length:376 Species:Danio rerio


Alignment Length:341 Identity:90/341 - (26%)
Similarity:163/341 - (47%) Gaps:40/341 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 ILFALIFVVGVLGNGTLIVVFLSVRQMRNVPNTYILSLALADLLVIITTVPLASTVYTVEY---- 146
            |.:.||.::..:||.|:|.:.|:.::||.|.|.:|::||.:|     .::...:||:...|    
Zfish    39 IAYTLIVIISFIGNVTVIWIILAHKRMRTVTNYFIVNLAFSD-----ASMATFNTVFNFVYALHN 98

  Fly   147 -WPYGSFLCSLSEFMKDVSIGVSVFTLTALSGDRYFAIVDPLRKFHAHGGGRRATRMTLATAVSI 210
             |.:|...|....|....::..|::::.|::.|||.||:.||:.       |.::..|......|
Zfish    99 DWYFGLGYCKFQNFFPITAMFSSIYSMAAIAVDRYMAIIHPLKP-------RLSSTTTKLLIGVI 156

  Fly   211 WLLAILCGLPALIGSNLKHLGINEKSIVICYPYPEEWGINYAKSMVLLHFLVYYAIPLVVIAVFY 275
            |.:|.....|....::.|   ......|....:|:::|..:..|..:...::.|.:||:|:.|.|
Zfish   157 WTVAFSLAFPQCYYASTK---FYFPRTVCMVEWPDDYGGKHQLSYQIAVIILIYLLPLLVMLVTY 218

  Fly   276 VLIALHLMYSASVPGEIQGAVR-QVRARRKVAVTVLAFVVIFGICFLPYHVFFLWFYFWPTAQDD 339
            .|:...| :.:.:|||.....: |::|:|||...::..|..|.||:||||::|:...|   .:|.
Zfish   219 SLVGQRL-WGSEIPGEASDHYQNQMQAKRKVVKMMIVVVTTFAICWLPYHIYFILGSF---NRDI 279

  Fly   340 YNAFWHVLR---IVAYCMSFANSCANPVALY------FVSGAFRKHFNRYLFCRGASGRRKKRGQ 395
            |..  |.::   :..:.::.:::..||: :|      |.|| |||.|....|.:.:.....:...
Zfish   280 YKQ--HYIQQVYLAIFWLAMSSTMYNPI-IYCCLNQRFRSG-FRKAFQWCPFVKISEEDNMELQH 340

  Fly   396 HDTFCMHRD--TSLTS 409
            ..||.|.|.  |..||
Zfish   341 MRTFHMRRSYRTETTS 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa1-RNP_611241.2 7tm_4 88..>188 CDD:304433 30/104 (29%)
7tm_1 98..364 CDD:278431 70/274 (26%)
tacr2NP_001314788.1 7tm_4 41..>166 CDD:304433 36/136 (26%)
7tm_1 51..307 CDD:278431 71/277 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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