DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smurf and Trip12

DIOPT Version :9

Sequence 1:NP_001261061.1 Gene:Smurf / 36999 FlyBaseID:FBgn0029006 Length:1061 Species:Drosophila melanogaster
Sequence 2:XP_038939619.1 Gene:Trip12 / 316575 RGDID:1306607 Length:2074 Species:Rattus norvegicus


Alignment Length:1307 Identity:272/1307 - (20%)
Similarity:444/1307 - (33%) Gaps:379/1307 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 QVYSTEISKSSLDPKWNAHYDLFLGIGDAITITVWNQRKIHKGSGFLGCVRIPAFNIQSLKGAGF 111
            ||...|||.|:|              |...||...:.::|::.:|....::.....:.:...:|:
  Rat   840 QVGEDEISLSTL--------------GRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNTSGY 890

  Fly   112 QRLDLGK------LSPDDDELVRGQI--IISLLSKDGPSSGNP----------LAIV-------- 150
            .  ||.|      |..:|.||.:..|  :..:|.:...||..|          |.|:        
  Rat   891 S--DLKKDDARAQLMKEDPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELL 953

  Fly   151 -------GPSGDVRGPSEDDSSED----------------SLPEGWEERRTDNGRVYYVNHATKS 192
                   ..|..:....   ||:|                .||:.:.......|.::.|.|..:|
  Rat   954 KDVLKNHAVSSHIASML---SSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKHLAES 1015

  Fly   193 TQWDRPRQPGVVGSSHATSPQQRHNTHNGNSGDRQAPAGPTRSTTCTNLMNN-G----HRSRDLS 252
                         .|..|||.:.....:|:.|. ..||....:|..||...: |    ..|||.|
  Rat  1016 -------------ESLLTSPPKACTNGSGSLGS-TTPASSGTATAATNASADLGSPSLQHSRDDS 1066

  Fly   253 VTASDERRHSTEILSSVGKENTSPTTP---------------VSATTTPGKKTS--SSNSSSAGG 300
            :..|.:.|.| ::|.........|..|               .|.|||...|:|  :|.:....|
  Rat  1067 LDLSPQGRLS-DVLKRKRLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWG 1130

  Fly   301 RTLEQRPTN--EPATPTSSTTSASVRLHSNDNHVKTPKHQTNGHAPPE----------------S 347
            |...|..:|  |||  .::..|...|..|.|. :...:.:..|....:                |
  Rat  1131 RLSAQSNSNNIEPA--RTAGVSGLARAASKDT-ISNNREKIKGWIKEQAHKFVERYFSSENMDGS 1192

  Fly   348 TPT--------SPTGQQN-YVNGNAQ-----NGSTSGNGSGQAAQPQSASNGWTQEDAATTTSPS 398
            .|.        :.|.|.| .|:|.|:     ....|   ....:..:...:|:.::.....||.|
  Rat  1193 NPALNVLQRLCAATEQLNLQVDGGAECLVEIRSIVS---ESDVSSFEIQHSGFVKQLLLYLTSKS 1254

  Fly   399 TTTSPPRHSQ---------SPPTPNISPPASVTPSANGN----VHSPN------------ANSTP 438
            ...:..|..:         |.|.|...|...|.|..:..    ||..|            .:..|
  Rat  1255 EKDAVSREIRLKRFLHVFFSSPLPGEEPVGRVEPVGHAPLLALVHKMNNCLSQMEQFPVKVHDFP 1319

  Fly   439 AGSGGGSRSYTAATPGQRSQRRSSRQQGEESSTRRRSSRGTRNGGTSGGGGGGGSGQRYASAAIA 503
            :|:|.|         |..|..|.| |..:..:|.:...:..|:...:......|...:....|:.
  Rat  1320 SGNGSG---------GSFSLNRGS-QALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALV 1374

  Fly   504 AANQAARPFL-------------------------DLPPGYEMRTTQQGQV----YFY---H-IP 535
               ||...:|                         ::......:....|.|    .||   | :|
  Rat  1375 ---QAIERYLVVRGIFRYGRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLP 1436

  Fly   536 TGVSTWHDPRIPRDF-----DTQHLTLDAIGPLPSG--WEQRKTASGRVYFVDHNN--------- 584
            ..::.:   :..|.|     |.:..|.|...||...  |.:..|...:....|..:         
  Rat  1437 YNMTVY---QAVRQFSVQAEDERESTDDESNPLGRAGIWTKTHTIWYKPVREDEESSKDCVGGKR 1498

  Fly   585 ----RTTQFTDPRLSGSILQMIRRGTVPPTSAANA----GTPAPP-SATPATPSAAA-------- 632
                .....|.||.:....::...|..|  |.||.    ..|.|| :.|...||...        
  Rat  1499 GRAQTAPTKTSPRNAKKHDELWHDGVCP--SVANPLEVYLIPTPPENITFEDPSLDVILLLRVLH 1561

  Fly   633 ------------AVPPQATPASNATPTTLTTTTN-----PPHRIVPDLPQGLLEGADLLP----- 675
                        |:..:..|.|....:.||...|     |...:..::|..|.|.....|     
  Rat  1562 AISRYWYYLYDNAMCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPF 1626

  Fly   676 ----------KYRRDLVGKLRALRTELQT-------------MQPQSGHCRLEVSRNEIFEESYR 717
                      .:.||     ||::..|.|             :.|:....:..|:|.|:.:::..
  Rat  1627 DTRQMLFYVTAFDRD-----RAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAES 1686

  Fly   718 LIMKMRAKDMRKRLMVKFKGEEGLDYGGVAREWLHLLSREMLNPQYGLFQYSRDDHYTLQINPDS 782
            ::..:.:.  |..|.::::.|.|...|... |:..|:|:|:.....||:   |.:..||. ||..
  Rat  1687 VMQDLGSS--RAMLEIQYENEVGTGLGPTL-EFYALVSQELQRADLGLW---RGEEVTLS-NPKG 1744

  Fly   783 G---------------------VNPDHLS----YFHFVGRTLGIAVFHGHCLDGGFTTPFYKQLL 822
            .                     ..|.|::    .|.|:|:.:..|:.....:|.....||||.:|
  Rat  1745 SQEGTKYIQNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKWML 1809

  Fly   823 NK--PITLGDIEGVDPDLHRSLTWM---------LESNISGIIES-TFSVENNSFGALVVH---- 871
            .:  .:|..|:..:||.:.||:..:         ||.:.|...|| .:::|..:.....|.    
  Rat  1810 RQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGL 1874

  Fly   872 ----------ELKPGGASIPVTEENKREYVKLYVNYRFMRGIEQQFLALQKGFCELIPSHLLRPF 926
                      |||.||..||||..|..||::|.:.:....|:.:||.:.:.||..:.|...|:.|
  Rat  1875 DFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVCRQFDSFRDGFESVFPLSHLQYF 1939

  Fly   927 DERELELVIGGISSIDVNDWRNNTRLKHC------TNETTQVLWFWQVVESYSSEMRARLLQFVT 985
            ...||:.::.| |..|.  |...|.::.|      |:::..|.:.::::.|:.:|.:...|||||
  Rat  1940 YPEELDQLLCG-SKADT--WDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVT 2001

  Fly   986 GSSRVPLQGFRALQGSTGAVGPRLFTIHLT---ADVPTQNLPKAHTCFNRIDLPPYETYQLLCDK 1047
            ||.|:|:.|||:|       .|.|..:..|   .:.|...||...||.|.:.||.|.:.:::.||
  Rat  2002 GSPRLPVGGFRSL-------NPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMRDK 2059

  Fly  1048 LTQAVEE 1054
            |..|..|
  Rat  2060 LLIAARE 2066

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmurfNP_001261061.1 C2_Smurf-like 14..135 CDD:176028 21/95 (22%)
WW 169..198 CDD:278809 6/28 (21%)
WW 514..546 CDD:197736 6/39 (15%)
WW 562..594 CDD:197736 7/46 (15%)
HECTc 702..1058 CDD:238033 107/413 (26%)
HECTc 726..1058 CDD:214523 104/389 (27%)
Trip12XP_038939619.1 SRP1 489..>714 CDD:227396
WWE 814..876 CDD:397111 12/49 (24%)
HECTc 1672..2072 CDD:238033 107/412 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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