DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smurf and wwp2

DIOPT Version :9

Sequence 1:NP_001261061.1 Gene:Smurf / 36999 FlyBaseID:FBgn0029006 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001090841.1 Gene:wwp2 / 100038252 XenbaseID:XB-GENE-961516 Length:729 Species:Xenopus tropicalis


Alignment Length:832 Identity:272/832 - (32%)
Similarity:392/832 - (47%) Gaps:166/832 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 SSSNSSSAGGRTLE--QRPTNEPATPTSSTTSASVRLHSNDNHVKTPKHQ------------TNG 341
            ||.::.::.|.|.|  |....|.:.|......|:.:...:|..:...:|.            .||
 Frog     3 SSGSNQTSDGFTQEKLQLSVKENSVPLQINLQAAHKASGDDLTIALDEHMEAVEDADSEMVFENG 67

  Fly   342 H-------APPESTPTSPTGQQNYVNGNAQNGSTSGNGSGQAAQPQSASNGWTQEDAATTTSPST 399
            |       :||:|. :|.:.|......|..|.:...||....|...........|..:..:||..
 Frog    68 HYALEKISSPPQSA-SSDSSQPIKNQDNTSNITVLVNGESSHATSSELDVPAQDEAFSNISSPLP 131

  Fly   400 TTSPPRHSQSPPTPNISPPASVTPSANGNVHSPNANSTPAGSGGGSRSYTAATPGQRSQRRSSRQ 464
            :......|:.........|:::||::.|                       ..||...:..|   
 Frog   132 SLGSELRSEDNEDTQSLQPSALTPTSEG-----------------------LPPGWEQRELS--- 170

  Fly   465 QGEESSTRRRSSRGTRNGGTSGGGGGGGSGQRYASAAIAAANQAARPFLDLPPGYEMRTTQQGQV 529
                                        :|:.|.......:....||   ||.|:|.|...:|:.
 Frog   171 ----------------------------NGRVYYVDHNTKSTTWERP---LPLGWEKRVDNRGRF 204

  Fly   530 YFYHIPTGVSTWHDP--RIPRDFD------------TQHLTL-------------DAIGPLPSGW 567
            |:....|..:||..|  ...|:::            .|.|:.             |.:||||:||
 Frog   205 YYVDHNTRTTTWQRPTAEYVRNYEQWQSQRNQMQGAMQQLSQRFLYQPSSAAPDNDPLGPLPNGW 269

  Fly   568 EQRKTASGRVYFVDHNNRTTQFTDPRLSGSILQMIRRGTVPPTSAANAGTPAPPSATPATPSAAA 632
            |:|:. :||||:|:||.||||:.|||..|.|.:                        ||.|    
 Frog   270 EKRQD-NGRVYYVNHNTRTTQWEDPRTQGMIQE------------------------PALP---- 305

  Fly   633 AVPPQATPASNATPTT-----------LTTTTNPPHRIVPDLPQGLLEGADLLP-KYRRDLVGKL 685
                   |......|:           ..||...|.   |....|:.:|..  | .|.|....|.
 Frog   306 -------PGWEMKYTSEGIRYFVDHNKRATTFKDPR---PGFDSGVKQGGS--PGAYDRSFRWKY 358

  Fly   686 RALRTELQTMQPQSGHCRLEVSRNEIFEESYRLIMKMRAKDMRKRLMVKFKGEEGLDYGGVAREW 750
            ...|. |........|.::.|||..:||:|::.||.|:..|:|:||.:..:|||||||||:||||
 Frog   359 HQFRF-LCHSNALPSHVKISVSRQTLFEDSFQQIMNMKPYDLRRRLYIIMRGEEGLDYGGIAREW 422

  Fly   751 LHLLSREMLNPQYGLFQYSRDDHYTLQINPDSGVNPDHLSYFHFVGRTLGIAVFHGHCLDGGFTT 815
            ..|||.|:|||.|.||:|:..::|.|||||.|.:|||||:||.|:||.:.:|::||..:|.|||.
 Frog   423 FFLLSHEVLNPMYCLFEYAGKNNYCLQINPASSINPDHLTYFRFIGRFIAMALYHGKFIDTGFTL 487

  Fly   816 PFYKQLLNKPITLGDIEGVDPDLHRSLTWMLESNISGI-IESTFSVENNSFGALVVHELKPGGAS 879
            ||||::|||..||.|:|.:||:.:.|:.|:.::|:... :|..|..:....|.:..|:||.||.:
 Frog   488 PFYKRMLNKKPTLRDLESIDPEFYNSIMWIKDNNLEECELELYFVQDMEILGEVTSHKLKEGGEN 552

  Fly   880 IPVTEENKREYVKLYVNYRFMRGIEQQFLALQKGFCELIPSHLLRPFDERELELVIGGISSIDVN 944
            |.||||||.|::.|..::||.||:|:|..|...||.|::|...||.|||:||||::.|:..||:.
 Frog   553 IRVTEENKEEFISLLTDWRFTRGVEEQTNAFLDGFKEVVPLEWLRYFDEKELELMLCGMQEIDIA 617

  Fly   945 DWRNNTRLKHCTNETTQVLWFWQVVESYSSEMRARLLQFVTGSSRVPLQGFRALQGSTGAVGPRL 1009
            ||:.||..:|.|..:.||.||||||:...:|.|.||||||||:.|:|:.||..|.||.   ||:.
 Frog   618 DWQKNTIYRHYTKNSKQVQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFVELIGSN---GPQK 679

  Fly  1010 FTIHLTADVPTQNLPKAHTCFNRIDLPPYETYQLLCDKLTQAVEETCGFAVE 1061
            |.|....  ....||::||||||:|||||::|:.|.:||..|:|||.||..|
 Frog   680 FCIDRVG--KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmurfNP_001261061.1 C2_Smurf-like 14..135 CDD:176028
WW 169..198 CDD:278809
WW 514..546 CDD:197736 11/33 (33%)
WW 562..594 CDD:197736 20/31 (65%)
HECTc 702..1058 CDD:238033 173/356 (49%)
HECTc 726..1058 CDD:214523 164/332 (49%)
wwp2NP_001090841.1 WW 160..189 CDD:366073 5/59 (8%)
WW 190..219 CDD:366073 10/28 (36%)
WW 265..293 CDD:366073 17/28 (61%)
WW 305..335 CDD:238122 6/43 (14%)
HECTc 375..727 CDD:238033 174/356 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167687at2759
OrthoFinder 1 1.000 - - FOG0000080
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2273
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

Return to query results.
Submit another query.