DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smurf and herc3

DIOPT Version :9

Sequence 1:NP_001261061.1 Gene:Smurf / 36999 FlyBaseID:FBgn0029006 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001139096.1 Gene:herc3 / 100003587 ZFINID:ZDB-GENE-090313-139 Length:1046 Species:Danio rerio


Alignment Length:380 Identity:124/380 - (32%)
Similarity:201/380 - (52%) Gaps:31/380 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   692 LQTMQP---QSGHCRLEVSRNEIFEESYRLIMKMRAKDMRKRLMVKFKGEEGLDYGGVAREWLHL 753
            |.||:|   ::....|.|.||.:..::.|.:......|::|.|.|.|.|||.:|.|||.:|:..|
Zfish   686 LLTMEPLLARNPFLVLHVRRNHLVSDALRELTIYNDVDLKKPLKVIFDGEEAVDAGGVTKEFFLL 750

  Fly   754 LSREMLNPQYGLF-QYSRDDHYTLQINPDSGVNPDHLSYFHFVGRTLGIAVFHGHCLDGGFTTPF 817
            |.:|::||.||:| |||..:  .|..:....|  :| ::||.:|...|:|:::...:|..|....
Zfish   751 LLKELMNPIYGMFTQYSESN--LLWFSDKCFV--EH-NWFHLIGIICGLAIYNSTVVDLHFPLVL 810

  Fly   818 YKQLLNKPITLGDIEGVDPDLHRSLTWMLESNISGIIEST----FSVENNSFGALVVHELKPGGA 878
            ||:||....||.|::.:.|...|||..:||  ..|.:|.|    |::....:|...|.||..||.
Zfish   811 YKKLLEISPTLDDLKELSPTEGRSLQQLLE--FEGDVEETFCLNFAITREYYGITEVKELVQGGK 873

  Fly   879 SIPVTEENKREYVKLYVNYRFMRGIEQQFLALQKGFCELIPSHLLRPFDERELELVIGGISSIDV 943
            :|.|.:.|::|:|:.|:.|.|...:::|:.|...||.::....:|..|...||..::.|.::.:.
Zfish   874 TIAVDKTNRKEFVQAYLQYVFSDAVQEQYSAFSSGFLKVCGGEILSLFQPSELMAMVVGNNNYNW 938

  Fly   944 NDWRNNTRLK---HCTNETTQVLWFWQVVESYSSEMRARLLQFVTGSSRVPLQGFRALQGSTGAV 1005
            .:...|...|   ..|:.|.::  ||:|...:|.|.:.:.|.|:|||.|:|:.|..:|:      
Zfish   939 EEMEKNASYKGEFSATHPTVKM--FWEVFHEFSLEKKKQFLLFLTGSDRIPIHGMASLR------ 995

  Fly  1006 GPRLFTIHLTADVPTQNLPKAHTCFNRIDLPPYETYQLLCDKLTQAVEETCGFAV 1060
                ..|..|| .....||.||||:|.:|:|.|:|.:.|..:||||||:..||::
Zfish   996 ----IVIQSTA-AEEHYLPVAHTCYNMLDMPCYQTKETLRQRLTQAVEQYEGFSL 1045

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmurfNP_001261061.1 C2_Smurf-like 14..135 CDD:176028
WW 169..198 CDD:278809
WW 514..546 CDD:197736
WW 562..594 CDD:197736
HECTc 702..1058 CDD:238033 118/363 (33%)
HECTc 726..1058 CDD:214523 113/339 (33%)
herc3NP_001139096.1 RCC1 4..49 CDD:278826
RCC1_2 37..65 CDD:290274
RCC1 52..99 CDD:278826
RCC1 103..152 CDD:278826
RCC1 155..205 CDD:278826
RCC1 208..257 CDD:278826
RCC1 260..308 CDD:278826
RCC1 314..374 CDD:278826
HECTc 699..1044 CDD:238033 119/364 (33%)
HECTc 723..1043 CDD:214523 113/339 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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