DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP54D and myo9ab

DIOPT Version :10

Sequence 1:NP_611236.2 Gene:RhoGAP54D / 36996 FlyBaseID:FBgn0034249 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_001410713.1 Gene:myo9ab / 562199 ZFINID:ZDB-GENE-080424-6 Length:2304 Species:Danio rerio


Alignment Length:491 Identity:103/491 - (20%)
Similarity:183/491 - (37%) Gaps:104/491 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 LMLEK--------NLTQEGLFRKAGAVSRQNELRMHIQHD-KPLNLELAGFSAHDCATVFKGFLS 178
            |::||        .|..||::||:|:.::..||:..:..| ..:||:  .::.|..|:|.|.:|.
Zfish  1831 LVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELKQGLDTDANSVNLD--DYNIHVIASVLKQWLR 1893

  Fly   179 ELPEPLLTDAHYPAHLQIAPLCQALNGQTTATAERQQHLLNSVQLLLLLLPEEHRELLQHIIEML 243
            :||.||:|...|...|:...|            :.::.::..|..::..|...|...|:.:|..|
Zfish  1894 DLPNPLMTFELYEEFLRAMGL------------QDKREVVQGVYSIIDQLSRTHLNTLERLIFHL 1946

  Fly   244 HAVAKHEKSNKMSADNLATLFTPHLI-CPRQLPPEVLHYQAKKMSSIVTYMIVRGLDIFEVPGKL 307
            ..::..|::|:|||:.||.:|.|.:: ||....|........|.::.|..:|...:..::...| 
Zfish  1947 VRISFQEETNRMSANALAIVFAPCILRCPDTTDPLQSVRDISKTTACVELIICEQMRKYKARLK- 2010

  Fly   308 STDIRAY-FLERKRK-------KTMSPEQTLDESISDVSTVNTVYTFVDRAATAAATNTNNTDTE 364
              ||... |.|.|.|       ::|.|             |.....|:..:.|..:.|.......
Zfish  2011 --DINTLEFAENKAKSRLTHIRRSMKP-------------VLIAVRFIGISRTVTSPNAAKKGKS 2060

  Fly   365 LAQLYAHIQSMPESSKK-------------------------------RRLIKQFNKQNGQGTPL 398
            .|:...|....|..|.:                               .:.|:...|:..:.|..
Zfish  2061 RARKSGHHTPSPPLSPRASEREEPVDEGAEPVLSEQQQAAMQQEEKVLTQQIENLQKEKEELTYE 2125

  Fly   399 QLVVMNRLKNNEATRSAKSLG--DSIKKHIFHKSLMSRTPKRVPPSFHLASGSETPNMSHVKPPK 461
            .|.:..|..::|...|..|:|  ||.:..:..:...|...::.|.:...:...::.:.|.     
Zfish  2126 MLALEPRASDDEMLESEASIGTADSSENLMESEGAASDPWEKSPGAVSASRWRKSESKSR----- 2185

  Fly   462 MRVLFQSPTPPTPTSSTITSVSLSTNTRHQLQKSISSASLKIESS---------------SSDSS 511
             |.|.:.|.......|.:.|:|..::|.|...:|.||..|...||               .:..|
Zfish  2186 -RCLRRQPESLDSVDSAVASLSSVSSTPHYRFRSSSSGPLFSSSSPTGDLHILPDPESCEQASLS 2249

  Fly   512 SSCATSGSISAPVSR--QQSKESPSGNGAAGASGQE 545
            :.||:|...:.|..|  :.....|...|..|...:|
Zfish  2250 ARCASSSEKTRPRPRANRSCPPKPREPGDTGGRRRE 2285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP54DNP_611236.2 RhoGAP 107..313 CDD:470621 51/199 (26%)
myo9abNP_001410713.1 Ubl1_cv_Nsp3_N-like 16..111 CDD:475130
MYSc_Myo9 163..952 CDD:276836
MSCRAMM_ClfA <1471..1581 CDD:468110
C1_Myosin-IXa 1749..1806 CDD:410433
RhoGAP_myosin_IXA 1815..2000 CDD:239871 48/182 (26%)
Blue background indicates that the domain is not in the aligned region.

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